PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g15084.2.p
Common NameBRADI_3g15084
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ERF
Protein Properties Length: 180aa    MW: 19326 Da    PI: 10.8418
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g15084.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.23.7e-172877355
               AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                      + GVr ++ +gr++AeIrd + ng  +r++lg+fgtae Aa a+++a+++ +g
  Bradi3g15084.2.p 28 FIGVRARP-WGRYAAEIRDSTRNG--ARVWLGTFGTAEAAAMAYDQAALSSRG 77
                      57******.**********44465..**********************98665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103220.2442785IPR001471AP2/ERF domain
SMARTSM003804.5E-262791IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-192886IPR016177DNA-binding domain
PfamPF008474.9E-122877IPR001471AP2/ERF domain
PRINTSPR003675.1E-82839IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.9E-262886IPR001471AP2/ERF domain
CDDcd000181.05E-122885No hitNo description
PRINTSPR003675.1E-85167IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
MYSSSSSSSS DSSFPSELSS RIKPAMAFIG VRARPWGRYA AEIRDSTRNG ARVWLGTFGT  60
AEAAAMAYDQ AALSSRGAAT PLNFPLARVQ DSLRVLALGA GAGSGSPVLA LKQRHSRRTR  120
RKKADILSAV SGRKKKKSNC NNMAAAGKNG EQKRFILELE DLGTEYLEEL LRISEQLIC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-2228851572Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1120136RKKADILSAVSGRKKKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g15084.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003571392.21e-127ethylene-responsive transcription factor 15
TrEMBLA0A2K2CX691e-126A0A2K2CX69_BRADI; Uncharacterized protein
STRINGEMT243425e-47(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27737249
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.12e-24ethylene response factor 1