PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g15591.1.p
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ERF
Protein Properties Length: 312aa    MW: 33425.9 Da    PI: 4.3625
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g15591.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP227.57.8e-0963103255
               AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       +++GVr+ ++ g               +  +lg+f+taeeAa+a++aa+ +l+g
  Bradi3g15591.1.p  63 KFRGVRRTRS-GN-------T-----GRMAWLGSFDTAEEAARAYDAAAVRLRG 103
                       6777775553.44.......2.....4888**********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103214.56542111IPR001471AP2/ERF domain
SuperFamilySSF541712.09E-1263111IPR016177DNA-binding domain
SMARTSM003804.3E-1863117IPR001471AP2/ERF domain
PRINTSPR003671.9E-66475IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.5E-1473111IPR001471AP2/ERF domain
PRINTSPR003671.9E-693113IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MKPKIPSATS GPLGVGSVQH QQRGGASSGV MAAEHEEEAA VVRAGTKRKR ERKAAGASDR  60
STKFRGVRRT RSGNTGRMAW LGSFDTAEEA ARAYDAAAVR LRGPKAVTNF EQPVAVAAIA  120
DADDDNGEMP GEETDVVGDE GEDVCSQQLT MQAPVTGQVG SKVMEAWMEF HGDHRRRQLI  180
PVRPDSLGTA EEAVKLDDGV TAEAEFKQPV ATAANDGDGQ QLHARPDNTP LPSVSYDNSS  240
DDPLLALLTG FSEQPALLND FLGQSVFLNN FLEQPAFLNN LLEQPAFINN FPEQPASDLL  300
SEDFLNDMDF T*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g15591.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024317984.11e-171ethylene-responsive transcription factor RAP2-3
TrEMBLA0A2K2CXC00.0A0A2K2CXC0_BRADI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP5014622
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53290.13e-06cytokinin response factor 3