PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g15599.1.p
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ERF
Protein Properties Length: 281aa    MW: 30484.4 Da    PI: 5.3741
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g15599.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP237.36.7e-122465247
               AP2  2 gykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaai 47
                      g++GV++ + +g++ A+I+d       r +r +lg+fg ae+Aa+a+i
  Bradi3g15599.1.p 24 GFRGVHRAP-SGKYTAQIWDrR-----RgARLWLGTFGAAEDAARACI 65
                      89****999.7*********33.....36*****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541719.81E-102464IPR016177DNA-binding domain
PfamPF008473.6E-72465IPR001471AP2/ERF domain
PROSITE profilePS5103212.82463IPR001471AP2/ERF domain
SMARTSM003802.6E-52477IPR001471AP2/ERF domain
PRINTSPR003678.0E-62536IPR001471AP2/ERF domain
CDDcd000181.10E-142563No hitNo description
Gene3DG3DSA:3.30.730.105.4E-122563IPR001471AP2/ERF domain
PRINTSPR003678.0E-64763IPR001471AP2/ERF domain
PROSITE profilePS510328.557108196IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.8E-5164196IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MAVEHGEASV GKRKAAGPSD ARRGFRGVHR APSGKYTAQI WDRRRGARLW LGTFGAAEDA  60
ARACIGRGPK PTSRSINPWP AAGIANAEEA LLQHVYCGDK DAIVMSDKET GIVCDEGELC  120
SEHLVQPWMM GQVNSKVQAR TREPASPESS MEFHGDRQHL LNPLWPDCFG TAEEAARGYG  180
TKAIKMHRVA AQTNFKQPLA TAANDSGTLL PSISYDYTSD DPLLALLNDF PEQPALSDFL  240
EQPVVLNDFL EQPGFNLVLD NIIPVVQLDD LGIKLPPAGW *
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g15599.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024317984.14e-31ethylene-responsive transcription factor RAP2-3
TrEMBLA0A0Q3HP350.0A0A0Q3HP35_BRADI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16770.11e-09ethylene-responsive element binding protein