PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g16500.1.p
Common NameBRADI_3g16500
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family B3
Protein Properties Length: 217aa    MW: 23827.3 Da    PI: 5.1706
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g16500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B382.73.4e-2641142197
                       EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS......-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesg......rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                       f+kv tpsdv+k++rlv+pk++ae+h   +  ++ ++l +ed           W+++++y+++s++yv+t+GW++Fv++++L +gD++ F+  
  Bradi3g16500.1.p  41 FDKVVTPSDVGKLNRLVVPKQHAERHfpPMAAAGMTELCFEDAAAgaagrtAAWRFRYSYWGSSQSYVITRGWSRFVREKRLSAGDTISFT-- 131
                       89*************************9556678889*****6555999999***************************************.. PP

                       SSSEE..EEEEE CS
                B3  86 grsefelvvkvf 97 
                        rs+++++++ +
  Bradi3g16500.1.p 132 -RSGGRYFIGYR 142
                       .57777777766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.8E-3237139IPR015300DNA-binding pseudobarrel domain
CDDcd100172.09E-2339135No hitNo description
SuperFamilySSF1019361.31E-2539147IPR015300DNA-binding pseudobarrel domain
PfamPF023623.2E-2241142IPR003340B3 DNA binding domain
SMARTSM010191.1E-1641145IPR003340B3 DNA binding domain
PROSITE profilePS5086312.80241145IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MIMEEATAQE RSHEEEEEDD LVDVHYQQGE AVGEGELEHL FDKVVTPSDV GKLNRLVVPK  60
QHAERHFPPM AAAGMTELCF EDAAAGAAGR TAAWRFRYSY WGSSQSYVIT RGWSRFVREK  120
RLSAGDTISF TRSGGRYFIG YRHRQPCRRH DIVFGSDADA GPAQPRLFGR GTSTMICHGE  180
AVAESPPPRS FRLFGVNVEC GTGAGEDDEE GGQGLG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A9e-393816311128DNA-binding protein RAV1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g16500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024316233.11e-159putative B3 domain-containing protein Os08g0157700
SwissprotQ7EZD54e-52Y8577_ORYSJ; Putative B3 domain-containing protein Os08g0157700
TrEMBLA0A0Q3Q0Z71e-158A0A0Q3Q0Z7_BRADI; Uncharacterized protein
STRINGBRADI3G16500.11e-157(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141642426
Representative plantOGRP1448744
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13260.15e-39related to ABI3/VP1 1