PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g17539.1.p
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family Trihelix
Protein Properties Length: 484aa    MW: 52381.4 Da    PI: 7.8992
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g17539.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix55.91.1e-17110207172
          trihelix   1 rWtkqevlaLiearr..........................emeerlrrgk........lkkplWeevskkmrergferspkqCkekwenlnk 59 
                       +Wt+ +v++Li ++                           +        +         kk++W++ s++m+ergf +sp+qC++k+++lnk
  Bradi3g17539.1.p 110 KWTDAMVRLLIMVVYnagpvedasgaaaeagkkkassssssS--------SsrgvqvqqGKKGKWRSASQAMSERGFAVSPQQCEDKFNDLNK 194
                       799999999999998888888888888877765554433322........0344444449********************************* PP

          trihelix  60 rykkikegekkrt 72 
                       ryk++ ++ +++ 
  Bradi3g17539.1.p 195 RYKRVLDILGSGM 207
                       *****99998875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.0E-15108204No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 484 aa     Download sequence    Send to blast
MEGAGAGAGM WPQGVLASSA AAMLGLGTGP QQQQQQQAVS QLPQYSLLQQ LQGGGFQHHQ  60
PQPVPMPVPP EPEPESPVPP EPEEETTDGA GAGNDDGGVP GAGFVWTRVK WTDAMVRLLI  120
MVVYNAGPVE DASGAAAEAG KKKASSSSSS SSSRGVQVQQ GKKGKWRSAS QAMSERGFAV  180
SPQQCEDKFN DLNKRYKRVL DILGSGMARA VLQNPAVLDA AMSKLAPAAR ELARKLLGPK  240
QIFGFREMCL YHNAVAATGA AAAASKPPKP VKPVKPVKPV VTAALPTINE VEDEEDEEAM  300
GFGRRNPKRR RGESSKAKGV AVAEEEEEAD PEETEEDEDA PLLSAMAVPQ LQSKLDAMGP  360
PGGGGDLEEA RRWLQRRAME VQEKLKACDR RDKELDAHRK KWERFREVKE QEMDLEELRI  420
IHARRKLLVL KQKELDRKIG ERQRARAFQQ KQKEKEKQVG SGPAFGGCSV PLFPTPTCVA  480
HFS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g17539.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010236469.10.0uncharacterized protein LOC104584057
TrEMBLA0A2K2CXU20.0A0A2K2CXU2_BRADI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP5015622
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10040.13e-33sequence-specific DNA binding transcription factors