PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g17573.1.p
Common NameBRADI_3g17573, LOC106866490
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family NAC
Protein Properties Length: 198aa    MW: 21396.3 Da    PI: 9.7736
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g17573.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM30.88.2e-101614311127
               NAM  11 deelvveyLkkkvegkk.leleev.ikevdiykvePwdLpk....kvkaeek....ewyfFskrdkkyatgk.....rknratksgyWkatgk 88 
                       de l v+ L+++  g    +l  + ++ +++++++P +L         aee+     ++fFs+ +++  +        ++ + + g Wka   
  Bradi3g17573.1.p  16 DERLAVQALARRQLGLLpPPL-PFpVHYANVFSSHPAHLYDdfreG--AEERdgygGVFFFSQMARRRLRRGpwlssSSSSSNNPGQWKAATG 105
                       566666666655555442334.3338889**********7423331..2222334466999998887764222333244445779****9888 PP

               NAM  89 dkevlsk..kgelvglkktLvfykgrapkgektdWvmheyr 127
                       +k+++ +  +g  +g ++tL  y gra +   ++W m+ y+
  Bradi3g17573.1.p 106 NKQIFGNqgGGGSIGGRTTLLHYGGRAGR---SRWAMDVYS 143
                       8999988677788**********888877...9****9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100519.9936166IPR003441NAC domain
SuperFamilySSF1019415.36E-1516166IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
MAAGRIDAMM PLKAEDERLA VQALARRQLG LLPPPLPFPV HYANVFSSHP AHLYDDFREG  60
AEERDGYGGV FFFSQMARRR LRRGPWLSSS SSSSNNPGQW KAATGNKQIF GNQGGGGSIG  120
GRTTLLHYGG RAGRSRWAMD VYSASARGIN NLLRDPDLCL CRVYWTGLGP PPDLPMTAVR  180
EAPPLAGEFS SMCSIGT*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g17573.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014756233.11e-144uncharacterized protein LOC106866490
TrEMBLA0A0Q3HPV51e-142A0A0Q3HPV5_BRADI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP5015722