PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bradi3g17802.1.p

Common Name

BRADI_3g17802

Organism

Brachypodium distachyon

Taxonomic ID

15368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

NF-YC

Protein Properties

Length: 241aa MW: 26633.9 Da PI: 5.1134

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bradi3g17802.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	133.3	7.7e-42	10	110	1	97
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkad.edvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdif 89 ql++fw+++ ie+++dfk h+lPlarikki+ka e+v+mi+ ea ll+kace+fi eltlrswl+++en+rrtl+k+diaaav+r + f Bradi3g17802.1.p 10 QLQAFWSDRldeIEHMSDFKTHSLPLARIKKIMKASgENVQMIAGEAHGLLAKACEIFIQELTLRSWLQTRENNRRTLQKNDIAAAVSRNEAF 102 89***987779*****************85389************************************************** PP NF-YC 90 dflvdivp 97 dflvdi+ Bradi3g17802.1.p 103 DFLVDIMQ 110 ***986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	3.06E-26	10	105	IPR009072	Histone-fold
Pfam	PF00808	1.6E-18	32	96	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
Gene3D	G3DSA:1.10.20.10	1.7E-29	33	109	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 241 aa Download sequence Send to blast
MQQEDQHQQQ LQAFWSDRLD EIEHMSDFKT HSLPLARIKK IMKASGENVQ MIAGEAHGLL 60 AKACEIFIQE LTLRSWLQTR ENNRRTLQKN DIAAAVSRNE AFDFLVDIMQ DNGAGLPTGT 120 MQTMVPGMGT FEMYCGNQQP VPFAWPQPQQ QQSPHNASRF ILTKCTLAMD QHSRPQTTPW 180 PCMDQPRQAL GRVHLDALGR AGDGVDEDED NAVAPRGRPA AVSRVVSEGE EDAAVGQGAG 240 *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_B	8e-37	19	109	4	93	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	83	89	RRTLQKN

Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bradi3g17802.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003571524.1	1e-113	nuclear transcription factor Y subunit C-4
Swissprot	Q8LCG7	2e-46	NFYC2_ARATH; Nuclear transcription factor Y subunit C-2
TrEMBL	A0A0Q3FBH4	1e-179	A0A0Q3FBH4_BRADI; Uncharacterized protein
STRING	BRADI3G17800.1	9e-95	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP20936	2	7
Representative plant	OGRP315	17	117

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G56170.2	1e-47	nuclear factor Y, subunit C2

Link Out ? help Back to Top
Phytozome	Bradi3g17802.1.p

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Li S, et al. HEAT-INDUCED TAS1 TARGET1 Mediates Thermotolerance via HEAT STRESS TRANSCRIPTION FACTOR A1a-Directed Pathways in Arabidopsis. Plant Cell, 2014. 26(4): p. 1764-1780 [PMID:24728648] Mei X, et al. Identification and characterization of paternal-preferentially expressed gene NF-YC8 in maize endosperm. Mol. Genet. Genomics, 2015. 290(5): p. 1819-31 [PMID:25851237] Baud S, et al. Deciphering the Molecular Mechanisms Underpinning the Transcriptional Control of Gene Expression by Master Transcriptional Regulators in Arabidopsis Seed. Plant Physiol., 2016. 171(2): p. 1099-112 [PMID:27208266] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]