PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bradi3g17830.1.p

Common Name

BRADI_3g17830

Organism

Brachypodium distachyon

Taxonomic ID

15368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

NF-YC

Protein Properties

Length: 119aa MW: 13321.1 Da PI: 5.1474

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bradi3g17830.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	28.7	2.8e-09	76	115	1	35
NF-YC 1 qlksfwekq...iekatdfknhelPla..rikkilkaded 35 ql+ fw+++ ie+ ++fk h+lPla rikki+ka + Bradi3g17830.1.p 76 QLQDFWINRmaeIEQISEFKTHSLPLArpRIKKIMKAATE 115 89**99877789********9445****9765 PP

Sequence ? help Back to Top
Protein Sequence Length: 119 aa Download sequence Send to blast
MDRGTATLSQ LLGKMLLQAP NYLVLAEVQL PLGLDDTNTQ DQDGHADYID EFGTTRNEGV 60 PIATTPLQQK DQPRQQLQDF WINRMAEIEQ ISEFKTHSLP LARPRIKKIM KAATEKSS*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	101	109	ARPRIKKIM

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bradi3g17830.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	I1I1W7	1e-81	I1I1W7_BRADI; Uncharacterized protein
STRING	BRADI3G17830.1	2e-82	(Brachypodium distachyon)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G56170.2	1e-08	nuclear factor Y, subunit C2

Link Out ? help Back to Top
Phytozome	Bradi3g17830.1.p