PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g18073.1.p
Common NameBRADI_3g18073, LOC104584063
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ERF
Protein Properties Length: 203aa    MW: 21817.6 Da    PI: 11.0312
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g18073.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.12.1e-1861110255
               AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                       + +G+r ++ +g+++AeIrdp     r  r++lg+++tae+Aa+a++aa+++++g
  Bradi3g18073.1.p  61 RLRGIRKRP-WGKYAAEIRDPA----RqGRVWLGTYDTAEQAARAYDAAARRIRG 110
                       679******.**********83....359************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.6E-1260110IPR001471AP2/ERF domain
CDDcd000183.78E-1560118No hitNo description
SMARTSM003805.8E-3361124IPR001471AP2/ERF domain
PROSITE profilePS5103223.19661118IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-2161119IPR016177DNA-binding domain
PRINTSPR003671.2E-96273IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.6E-3063118IPR001471AP2/ERF domain
PRINTSPR003671.2E-984100IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
MAREARDTCP PNPEANAIAR PHRQTDVVKR KSAPNANRKS VRNHEEAPPL PVYHVKQGLP  60
RLRGIRKRPW GKYAAEIRDP ARQGRVWLGT YDTAEQAARA YDAAARRIRG PKARTNFPLL  120
PTSAAAADEV ALRFAHKKPA SAAGSSTAGP SSSSSASSSS APEREESPVR ILTEAPPAAS  180
QLELTLGRLQ ALDLNFPPPA EI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-2163124769ATERF1
3gcc_A1e-2163124769ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Acts as a transcriptional inhibitor and may regulate other AtERFs (By similarity). {ECO:0000250, ECO:0000269|PubMed:11487705}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g18073.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010236477.11e-142ethylene-responsive transcription factor 11
SwissprotQ9FE677e-27ERF80_ARATH; Ethylene-responsive transcription factor 9
TrEMBLA0A0Q3I4R41e-141A0A0Q3I4R4_BRADI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP10337465
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20310.15e-18ethylene response factor 7
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]
  3. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]