PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g18670.2.p
Common NameBRADI_3g18670
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family M-type_MADS
Protein Properties Length: 255aa    MW: 28438.6 Da    PI: 9.2138
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g18670.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF60.32.3e-191664149
                      S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
            SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                      k i ++  r+v fskRr+g++ KA+ELS+LC+a va+++fs+ gk++ +
  Bradi3g18670.2.p 16 KAIHSEKARHVCFSKRRQGLFGKANELSTLCGAGVAIVVFSPGGKIFSF 64
                      579999***************************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006623.591868IPR002100Transcription factor, MADS-box
SMARTSM004322.4E-27867IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.53E-25984IPR002100Transcription factor, MADS-box
PRINTSPR004043.5E-171030IPR002100Transcription factor, MADS-box
PfamPF003191.2E-221864IPR002100Transcription factor, MADS-box
PRINTSPR004043.5E-173045IPR002100Transcription factor, MADS-box
PRINTSPR004043.5E-174566IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009960Biological Processendosperm development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MVKGKTTKGR QKIEIKAIHS EKARHVCFSK RRQGLFGKAN ELSTLCGAGV AIVVFSPGGK  60
IFSFGNPSVD SIIHRFLPKS INDAHAMVGG SNQIHVDPNN LRALSQEYSN LQMVMEAEQK  120
RKKRIQEEME EMERESEGRV MRWLNTDVTA LRLEELEEFH GELTALECMV NGRLYWLLQQ  180
AKKMKKTLPQ FHGKETSTAQ FMSPFKNVMP MSSTPFSSTN GQTTTSSVTG ETPFFLVYGA  240
EDTLSSELKI GSPC*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g18670.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF4693440.0KF469344.1 Brachypodium distachyon MADS-box transcription factor 50 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0Q3F7I40.0A0A0Q3F7I4_BRADI; Uncharacterized protein
STRINGBRADI3G18670.11e-166(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP122436128
Representative plantOGRP1617761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.13e-28AGAMOUS-like 62