PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bradi3g18800.1.p

Common Name

BRADI_3g18800, LOC100822241

Organism

Brachypodium distachyon

Taxonomic ID

15368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

WOX

Protein Properties

Length: 243aa MW: 26441.9 Da PI: 7.7621

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bradi3g18800.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	49.3	8.5e-16	26	86	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+++++eq+ +Le+ F++ +p ++e +++ + l + +++V++WFqNrR + ++ Bradi3g18800.1.p 26 RSRWAPKPEQILILESIFNSgMVNPAKDETARIRRLLerfgAVRDANVFYWFQNRRSRSRR 86 89***************99***********************************997 PP
2	Wus_type_Homeobox	105.1	4.5e-34	25	87	2	64
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 ar+RW+P+peQi iLe++++sG+++P+k+e+ ri++ Le++G+++d+NVfyWFQNr++R+r++ Bradi3g18800.1.p 25 ARSRWAPKPEQILILESIFNSGMVNPAKDETARIRRLLERFGAVRDANVFYWFQNRRSRSRRR 87 689**********************************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	11.499	22	87	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	4.5E-9	23	94	IPR009057	Homeodomain-like
SuperFamily	SSF46689	7.27E-13	24	93	IPR009057	Homeodomain-like
SMART	SM00389	2.2E-5	24	91	IPR001356	Homeobox domain
Pfam	PF00046	1.8E-13	26	86	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 243 aa Download sequence Send to blast
MDHQQHHSQA PTQRAGCGEG AEPAARSRWA PKPEQILILE SIFNSGMVNP AKDETARIRR 60 LLERFGAVRD ANVFYWFQNR RSRSRRRARQ LQHQAQLHQL PSAPHGIMHY GQLSCGGGGV 120 MSPAAAPVAS APAPTAGPHL LADVVGAGDD DLFAIPRQMG LMDHRYTETS QLTYQQPGTI 180 QVFINGAAYD VPSAGPLDLA GTFGHDVMLV HSSGEILPVN EHGVLMKNLQ MGECYYMVSR 240 SI*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bradi3g18800.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP005249	2e-96	AP005249.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OSJNBa0087F21.
GenBank	AP014964	2e-96	AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
GenBank	CP012616	2e-96	CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003571573.1	0.0	WUSCHEL-related homeobox 10
Swissprot	Q6Z3L4	5e-89	WOX10_ORYSJ; WUSCHEL-related homeobox 10
TrEMBL	I1I285	1e-179	I1I285_BRADI; Uncharacterized protein
STRING	BRADI3G18800.1	1e-180	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1078	37	109
Representative plant	OGRP4697	12	22

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G03660.1	1e-31	WUSCHEL related homeobox 11

Link Out ? help Back to Top
Phytozome	Bradi3g18800.1.p
Entrez Gene	100822241

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]