PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g19640.3.p
Common NameBRADI_3g19640
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family WRKY
Protein Properties Length: 577aa    MW: 62852.4 Da    PI: 6.0884
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g19640.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY90.21.7e-28250306259
                       --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                        Dg+nWrKYGqK+vk+s+++rsYYrCt ++C +kkkve+   d++v+ei+Y+g+H he
  Bradi3g19640.3.p 250 GDGFNWRKYGQKQVKSSDNSRSYYRCTNSSCLAKKKVEHYP-DGRVIEIIYRGTHSHE 306
                       6****************************************.***************8 PP
2WRKY101.64.6e-32421478259
                       --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                       +Dgy+WrKYGqK vkg+++prsYYrCt+ gCpv+k+ve++a+d + +++tYeg+Hnh+
  Bradi3g19640.3.p 421 SDGYRWRKYGQKIVKGNPNPRSYYRCTHDGCPVRKHVEKAADDINNMVVTYEGKHNHD 478
                       8********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.9E-24239308IPR003657WRKY domain
SuperFamilySSF1182901.44E-22243308IPR003657WRKY domain
PROSITE profilePS5081120.931244308IPR003657WRKY domain
SMARTSM007742.5E-28249307IPR003657WRKY domain
PfamPF031061.4E-21251305IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.4E-31414480IPR003657WRKY domain
PROSITE profilePS5081133.132415480IPR003657WRKY domain
SuperFamilySSF1182901.28E-27415480IPR003657WRKY domain
SMARTSM007748.2E-37420479IPR003657WRKY domain
PfamPF031061.2E-25422478IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 577 aa     Download sequence    Send to blast
MADGEPVAPA EGKHPAVEAA SAEAEKHPPP EPPESAPAEA KPEKEVEMET EASEVGKAEP  60
KEMMETDASE VGKAEPKEMM ETAEASDVGK AEPKEMMEKE EVAEPKEKEA EPKEAVKVKV  120
EKKEKEKAEI VATRRPPGSS PDAPILAVPM VAVPCFIAPP GFAGQFAMSH QAALASVTAQ  180
AHMQLQSPTS SAYSEGLPSP FPHPITPIAI RPLQQAPSVT QGNVCRPIAE RPSPSELKVH  240
QHQVAVNVVG DGFNWRKYGQ KQVKSSDNSR SYYRCTNSSC LAKKKVEHYP DGRVIEIIYR  300
GTHSHEPPQK TRFVKERLPH INVSPRGEET FRLVNTEIME SSLTPTPTSN KLKKSVVENS  360
EQQLFCSSDC EGDAGIKSED EHPSAEPQPK RRIVEATTPN SSPVLRTVRE QKIIVQAGKM  420
SDGYRWRKYG QKIVKGNPNP RSYYRCTHDG CPVRKHVEKA ADDINNMVVT YEGKHNHDQP  480
FQSSNESRDG SISLITSAVT ATDQTVTVAS ISDQKPSTSS STQKAAETES IKDTTLEHGG  540
EKGVESAQTL LSVTNPDDMK NSLLKDTSAV VPVQNN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-264204801777Probable WRKY transcription factor 4
2lex_A2e-264204801777Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g19640.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003571606.10.0probable WRKY transcription factor 32
TrEMBLA0A0Q3HQW10.0A0A0Q3HQW1_BRADI; Uncharacterized protein
STRINGBRADI3G19640.10.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13960.13e-66WRKY DNA-binding protein 4