PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g20610.1.p
Common NameBRADI_3g20610, LOC100828604
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family GeBP
Protein Properties Length: 455aa    MW: 49429.4 Da    PI: 8.929
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g20610.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57332.13.1e-10191276697
            DUF573   6 lwseeDeivlLqGlidfkaktgkspsddidafyefvkksis.fkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 
                        w+  Dei +L ++i + +++g++p +   +++  v + ++  + sk ++ eK+r+L+++++k v++   g  +   k++d   f+ls+  Wg
  Bradi3g20610.1.p 191 RWTLADEIKILEAFIGYVKTNGTQPGA--LDLIAAVGDTLDrKNCSKVEMYEKVRNLRQRYEKAVST---G--TLPVKDDDLRKFKLSEVAWG 276
                       4*********************88765..45666677777614689*******************99...4..44567888899999999997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045041.1E-12191276IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 455 aa     Download sequence    Send to blast
MARKRRAPSP PPPPPPPQEE SSSEETSSGE EEEVEPTPTR ATQKPHEIPK SPPTATAADA  60
TAEGSDDESS DSEIDAEAFQ LRQVVTSPSK PPAAASKLES DADEEQGEPS DKPEPLGKKK  120
EMKPKAPSAR KRQATESTPS GKSKKAKAEV EKAVPEPAPP PKAKKAKAGA ENTKKAVPDP  180
SPSSKSEKLK RWTLADEIKI LEAFIGYVKT NGTQPGALDL IAAVGDTLDR KNCSKVEMYE  240
KVRNLRQRYE KAVSTGTLPV KDDDLRKFKL SEVAWGANAK EVASASISQN DGAKGKKTQT  300
TKEKIEGDTK GRSSKSKKQG KHIEELEDNE TTDPQIGGTL VRSKREKSDK KMGGDVDSLG  360
PKEATEEMDT AANVKRIRKG FDELQNLYPN LSTYVESIKA QHPCGETLKR AFELIDDEKA  420
CTLESKIKKQ RVAEVKTEIR RADTKKEVAN MLLG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g20610.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003571636.10.0hepatoma-derived growth factor-related protein 2
TrEMBLI1I2T60.0I1I2T6_BRADI; Uncharacterized protein
STRINGBRADI3G20610.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP72892737
Representative plantOGRP1298033