PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g21380.1.p
Common NameBRADI_3g21380, LOC100846221
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family BBR-BPC
Protein Properties Length: 335aa    MW: 36713 Da    PI: 10.205
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g21380.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind361.22e-11013341301
         GAGA_bind   1 mdddgsre.rnkgyyepaaslkenlglqlmssia.erdaki.........rernlalsekkaavaerd......................... 57 
                       mdddgs   rn+g++ep    ++nlglqlmss++ +rd+k+         +++++  +++++++                             
  Bradi3g21380.1.p   1 MDDDGSLGmRNWGFFEPP--TRNNLGLQLMSSMPaDRDTKQllssspfihQHHHVHPHAPQHTH---Hhphphphlhprdgcggvssgapnda 88 
                       9*****999*******99..7899*********99******88888888522222222222222...1234566666667************* PP

         GAGA_bind  58 ....maflqrdkalaernkalverdnkllalllvensla.....salpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaa 141
                           m+f++++++++    a+++r++k+l+ +++ ++       + +p+g+++++gt+ +++lq+++  + e+++ + ++ e+++ + +ee+a
  Bradi3g21380.1.p  89 psvpMNFVHNEAWMHP---AHHPRESKILHAITTGHAGHvvhtvNPDPTGYGIIPGTNGLHTLQMMQ--KAEPQPPPPPKDECISPPLVEENA 176
                       ****************...**************999987888878899*****************54..455555666799************ PP

         GAGA_bind 142 eeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaC 234
                         ++e + +kk+q+ ++pk++k kk+kk   ++ ++ +++ + +r++ +kk++++v+ng++lD s++P+PvC+CtGa++qCY+WG+GGWqSaC
  Bradi3g21380.1.p 177 GFVTELPPPKKKQQRRQPKSPKPKKAKKAA-APCEDGAPKPV-PRRRGPKKHVGMVINGIDLDLSRIPTPVCTCTGAQQQCYRWGAGGWQSAC 267
                       ****************************55.55555555444.89************************************************ PP

         GAGA_bind 235 CtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
                       CtttiS+yPLP+stkr gaRiagrKmS+gafkk+LekLa+eGy+l+np+DLk++WAkHGtnkfvtir
  Bradi3g21380.1.p 268 CTTTISTYPLPMSTKRHGARIAGRKMSHGAFKKVLEKLAGEGYNLNNPIDLKTFWAKHGTNKFVTIR 334
                       ******************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF062174.5E-1191334IPR010409GAGA-binding transcriptional activator
SMARTSM012261.1E-1991334IPR010409GAGA-binding transcriptional activator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0050793Biological Processregulation of developmental process
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MDDDGSLGMR NWGFFEPPTR NNLGLQLMSS MPADRDTKQL LSSSPFIHQH HHVHPHAPQH  60
THHHPHPHPH LHPRDGCGGV SSGAPNDAPS VPMNFVHNEA WMHPAHHPRE SKILHAITTG  120
HAGHVVHTVN PDPTGYGIIP GTNGLHTLQM MQKAEPQPPP PPKDECISPP LVEENAGFVT  180
ELPPPKKKQQ RRQPKSPKPK KAKKAAAPCE DGAPKPVPRR RGPKKHVGMV INGIDLDLSR  240
IPTPVCTCTG AQQQCYRWGA GGWQSACCTT TISTYPLPMS TKRHGARIAG RKMSHGAFKK  300
VLEKLAGEGY NLNNPIDLKT FWAKHGTNKF VTIR*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000250}.
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00253DAPTransfer from AT2G01930Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g21380.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003573748.10.0barley B recombinant-like protein A
SwissprotP0DH881e-135BBRA_ORYSJ; Barley B recombinant-like protein A
SwissprotP0DH891e-135BBRB_ORYSJ; Barley B recombinant-like protein B
TrEMBLI1I3230.0I1I323_BRADI; Uncharacterized protein
STRINGBRADI3G21380.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22113697
Representative plantOGRP18651240
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01930.27e-63basic pentacysteine1
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]
  2. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]