PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bradi3g21460.10.p

Common Name

BRADI_3g21460, LOC100821626

Organism

Brachypodium distachyon

Taxonomic ID

15368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

bHLH

Protein Properties

Length: 223aa MW: 24344.1 Da PI: 5.1426

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bradi3g21460.10.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	33.1	1e-10	129	175	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 h + ErrRR+++ + f++L +++P a K +K++ L A++Y+++L+ Bradi3g21460.10.p 129 EHVASERRRREKMHHQFATLASIIPDiA------KTDKVSLLGSAIQYVHKLE 175 69999*******************88......*************9985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	13.649	125	174	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.3E-8	129	175	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.4E-15	129	187	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	6.77E-11	130	179	No hit	No description
SuperFamily	SSF47459	1.16E-14	130	192	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.6E-12	131	180	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 223 aa Download sequence Send to blast
MDSSSNQWLT ELENVELVEN LDLVDEISMQ QLAESLAEEL IPRDDQPHHK SLMPSLAAGI 60 PFTGGFNNST ESFPTGANSV FSFSDGSSVS SLNFSTPLEP PTTGGSYYCP SPSSEKRLSG 120 RRTSLSIQEH VASERRRREK MHHQFATLAS IIPDIAKTDK VSLLGSAIQY VHKLEEKLKA 180 LKEHQSTVST AESAPMFDVH CCIGNTGDGK EDDCEKGRRR GC*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	133	138	ERRRRE
2	134	139	RRRREK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bradi3g21460.10.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024318240.1	1e-160	transcription factor bHLH18 isoform X1
Refseq	XP_024318241.1	1e-160	transcription factor bHLH18 isoform X1
Refseq	XP_024318242.1	1e-160	transcription factor bHLH18 isoform X1
TrEMBL	A0A2K2CYN5	1e-164	A0A2K2CYN5_BRADI; Uncharacterized protein
STRING	BRADI3G21460.1	1e-159	(Brachypodium distachyon)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G46760.1	2e-11	bHLH family protein

Link Out ? help Back to Top
Phytozome	Bradi3g21460.10.p
Entrez Gene	100821626