PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bradi3g21460.12.p

Common Name

BRADI_3g21460

Organism

Brachypodium distachyon

Taxonomic ID

15368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

bHLH

Protein Properties

Length: 181aa MW: 19964.1 Da PI: 5.044

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bradi3g21460.12.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	21	6e-07	129	156	4	30
HHHHHHHHHHHHHHHHHHHHHCTSCC.C CS HLH 4 ahnerErrRRdriNsafeeLrellPk.a 30 h + ErrRR+++ + f++L +++P a Bradi3g21460.12.p 129 EHVASERRRREKMHHQFATLASIIPDiA 156 69999********************866 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	5.9E-7	129	157	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	8.14E-6	129	157	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.2E-4	129	156	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.36E-4	130	161	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 181 aa Download sequence Send to blast
MDSSSNQWLT ELENVELVEN LDLVDEISMQ QLAESLAEEL IPRDDQPHHK SLMPSLAAGI 60 PFTGGFNNST ESFPTGANSV FSFSDGSSVS SLNFSTPLEP PTTGGSYYCP SPSSEKRLSG 120 RRTSLSIQEH VASERRRREK MHHQFATLAS IIPDIAKEMR TFSDRQGLPP RQRDPVRAQT 180 *

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	133	138	ERRRRE
2	134	139	RRRREK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bradi3g21460.12.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014755614.1	1e-111	transcription factor MYC3 isoform X2
Refseq	XP_024318240.1	1e-111	transcription factor bHLH18 isoform X1
Refseq	XP_024318241.1	1e-111	transcription factor bHLH18 isoform X1
Refseq	XP_024318242.1	1e-111	transcription factor bHLH18 isoform X1
TrEMBL	A0A0Q3Q3E8	1e-129	A0A0Q3Q3E8_BRADI; Uncharacterized protein
STRING	BRADI3G21460.1	1e-111	(Brachypodium distachyon)

Link Out ? help Back to Top
Phytozome	Bradi3g21460.12.p