PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g21460.8.p
Common NameBRADI_3g21460, LOC100821626
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bHLH
Protein Properties Length: 250aa    MW: 27146 Da    PI: 4.6717
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g21460.8.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.81.2e-10129175455
                       HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                        h + ErrRR+++ + f++L +++P  a      K +K++ L  A++Y+++L+
  Bradi3g21460.8.p 129 EHVASERRRREKMHHQFATLASIIPDiA------KTDKVSLLGSAIQYVHKLE 175
                       69999*********************88......***************9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.649125174IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.7E-15129187IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.8E-8129175IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-14130191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.54E-11130179No hitNo description
SMARTSM003531.6E-12131180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MDSSSNQWLT ELENVELVEN LDLVDEISMQ QLAESLAEEL IPRDDQPHHK SLMPSLAAGI  60
PFTGGFNNST ESFPTGANSV FSFSDGSSVS SLNFSTPLEP PTTGGSYYCP SPSSEKRLSG  120
RRTSLSIQEH VASERRRREK MHHQFATLAS IIPDIAKTDK VSLLGSAIQY VHKLEEKLKA  180
LKEHQSTVST AESAPMFDVH CCIGNTGDGK EDDCEKDCMQ GEEGGADHGA HGAGEAWLVN  240
HEHQCCAVW*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1133138ERRRRE
2134139RRRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g21460.8.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014755614.10.0transcription factor MYC3 isoform X2
TrEMBLA0A0Q3FDB20.0A0A0Q3FDB2_BRADI; Uncharacterized protein
STRINGBRADI3G21460.11e-158(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46760.11e-11bHLH family protein