PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g22040.1.p
Common NameBRADI_3g22040, LOC100829306
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bZIP
Protein Properties Length: 184aa    MW: 20395.9 Da    PI: 9.9462
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g22040.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_145.81.3e-143695362
                      XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
            bZIP_1  3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62
                      +lkr rrk++NRe+A+rsR+RK++++eeL++ v +L +e ++L  +l+   + +a+ +++
  Bradi3g22040.1.p 36 DLKRKRRKESNRESAKRSRLRKQQQLEELTTQVNQLRTEKQQLVTTLNLTVQSYAAAETQ 95
                      69******************************************9999887777766655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1704.2E-113183No hitNo description
SMARTSM003381.1E-143498IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.8873678IPR004827Basic-leucine zipper domain
PfamPF001703.7E-113785IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.81E-103790No hitNo description
CDDcd147024.01E-163990No hitNo description
PROSITE patternPS0003604156IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009845Biological Processseed germination
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MSLSGGTLSS ETLSGSSHGT QSYGSEGNLE LQARMDLKRK RRKESNRESA KRSRLRKQQQ  60
LEELTTQVNQ LRTEKQQLVT TLNLTVQSYA AAETQNSVLR SQAMELESRL RALREIIYYM  120
NSASTQFRIP TAASQTTAAA YYPTTSLMAS AAASYDVAGA NAWGSGMQML QQQQPIELMY  180
HRC*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13742KRKRRK
23843RKRRKE
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00239DAPTransfer from AT1G75390Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g22040.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003571697.11e-130bZIP transcription factor 44
TrEMBLI1I3841e-128I1I384_BRADI; Uncharacterized protein
STRINGBRADI3G22040.11e-129(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37403276
Representative plantOGRP1070849
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75390.12e-16basic leucine-zipper 44