PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bradi3g22297.1.p

Common Name

BRADI_3g22297, LOC100831869

Organism

Brachypodium distachyon

Taxonomic ID

15368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

G2-like

Protein Properties

Length: 204aa MW: 22643.8 Da PI: 7.1272

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bradi3g22297.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	104.8	5.2e-33	36	90	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt +LH+rFv+a++qLGG++kAtPktil++m+vkgLtl h+kSHLQkYRl Bradi3g22297.1.p 36 KPRLRWTADLHDRFVDAIAQLGGPDKATPKTILRTMGVKGLTLFHLKSHLQKYRL 90 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.3E-31	33	91	IPR009057	Homeodomain-like
PROSITE profile	PS51294	11.098	33	93	IPR017930	Myb domain
SuperFamily	SSF46689	1.11E-16	36	92	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	6.3E-25	36	91	IPR006447	Myb domain, plants
Pfam	PF00249	7.6E-8	38	89	IPR001005	SANT/Myb domain
Pfam	PF14379	4.8E-18	131	176	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 204 aa Download sequence Send to blast
MFPGLIHHHH QHAADDAPRG HGGGSAPSLV LTADPKPRLR WTADLHDRFV DAIAQLGGPD 60 KATPKTILRT MGVKGLTLFH LKSHLQKYRL GKQSGKEITE QSKDGSYLME AQSGINLSPR 120 IPIPDVEESQ EVKEALREQM EVQRRLHEQV KVQECVKIRR EAHQTYIDSL LEKACMLVSE 180 QLSGFSISDY DLPDLASAGF QIP*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	7e-18	36	92	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	7e-18	36	92	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	7e-18	36	92	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	7e-18	36	92	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator (PubMed:26586833). Acts redundantly with PHR1 as a key component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). {ECO:0000269\|PubMed:26586833}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bradi3g22297.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in roots by low Pi. {ECO:0000269\|PubMed:26586833}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003573786.1	1e-149	protein PHR1-LIKE 2
Swissprot	Q94A57	6e-64	PHL2_ARATH; Protein PHR1-LIKE 2
TrEMBL	I1I395	1e-148	I1I395_BRADI; Uncharacterized protein
STRING	BRADI3G22297.1	1e-148	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3427	38	73
Representative plant	OGRP78	17	262

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24120.1	3e-66	G2-like family protein

Link Out ? help Back to Top
Phytozome	Bradi3g22297.1.p
Entrez Gene	100831869

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]