PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bradi3g22297.2.p

Common Name

BRADI_3g22297

Organism

Brachypodium distachyon

Taxonomic ID

15368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

G2-like

Protein Properties

Length: 159aa MW: 17702.2 Da PI: 9.4943

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bradi3g22297.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	105.4	3.2e-33	36	90	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt +LH+rFv+a++qLGG++kAtPktil++m+vkgLtl h+kSHLQkYRl Bradi3g22297.2.p 36 KPRLRWTADLHDRFVDAIAQLGGPDKATPKTILRTMGVKGLTLFHLKSHLQKYRL 90 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.3E-31	33	91	IPR009057	Homeodomain-like
PROSITE profile	PS51294	11.098	33	93	IPR017930	Myb domain
TIGRFAMs	TIGR01557	3.8E-25	36	91	IPR006447	Myb domain, plants
SuperFamily	SSF46689	6.45E-17	36	92	IPR009057	Homeodomain-like
Pfam	PF00249	4.7E-8	38	89	IPR001005	SANT/Myb domain
Pfam	PF14379	5.7E-7	131	152	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 159 aa Download sequence Send to blast
MFPGLIHHHH QHAADDAPRG HGGGSAPSLV LTADPKPRLR WTADLHDRFV DAIAQLGGPD 60 KATPKTILRT MGVKGLTLFH LKSHLQKYRL GKQSGKEITE QSKDGSYLME AQSGINLSPR 120 IPIPDVEESQ EVKEALREQM EVQRRLHEQV KTMQHPYV*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	2e-19	36	92	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-19	36	92	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-19	36	92	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-19	36	92	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator (PubMed:26586833). Acts redundantly with PHR1 as a key component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). {ECO:0000269\|PubMed:26586833}.
UniProt	Transcriptional activator (PubMed:26586833). Probable component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). Required for female gametophyte development and function (PubMed:15634699). {ECO:0000269\|PubMed:15634699, ECO:0000269\|PubMed:26586833}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bradi3g22297.2.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in roots by low Pi. {ECO:0000269\|PubMed:26586833}.
UniProt	INDUCTION: Up-regulated in roots by low Pi. {ECO:0000269\|PubMed:26586833}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT039053	1e-116	BT039053.1 Zea mays full-length cDNA clone ZM_BFb0367F20 mRNA, complete cds.
GenBank	JX469981	1e-116	JX469981.1 Zea mays subsp. mays clone UT3341 G2-like transcription factor mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003573786.1	1e-108	protein PHR1-LIKE 2
Swissprot	Q8LAJ7	1e-53	PHL3_ARATH; Protein PHR1-LIKE 3
Swissprot	Q94A57	1e-53	PHL2_ARATH; Protein PHR1-LIKE 2
TrEMBL	A0A0Q3FAD2	1e-112	A0A0Q3FAD2_BRADI; Uncharacterized protein
STRING	BRADI3G22297.1	1e-107	(Brachypodium distachyon)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G13640.2	2e-56	G2-like family protein

Link Out ? help Back to Top
Phytozome	Bradi3g22297.2.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Sanz-Fernández M, et al. Screening Arabidopsis mutants in genes useful for phytoremediation. J. Hazard. Mater., 2017. 335: p. 143-151 [PMID:28441590]