PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bradi3g22510.1.p

Common Name

BRADI_3g22510, LOC100833283

Organism

Brachypodium distachyon

Taxonomic ID

15368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

LBD

Protein Properties

Length: 256aa MW: 26343.9 Da PI: 7.0583

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bradi3g22510.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	123.6	1e-38	33	133	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 +C aCk+lrrkC+++C++apyf e+ +++fa+vhk+FGasnv+kll ++p +r da+ +++yeA+ar+rdPvyG+v+++++lqqq+++l+a Bradi3g22510.1.p 33 PCGACKFLRRKCVSGCIFAPYFNTENgAAHFAAVHKVFGASNVSKLLLQIPAPKRADAVFTICYEAQARIRDPVYGCVSHVFNLQQQVANLQA 125 7*******************998879************************************************************* PP DUF260 93 elallkee 100 el l+++ Bradi3g22510.1.p 126 ELTCLQAH 133 999876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	22.678	32	134	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	8.8E-39	33	131	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 256 aa Download sequence Send to blast
MSGSTSVGAA SGSGGSGSGG GGIGGSGAMG GGPCGACKFL RRKCVSGCIF APYFNTENGA 60 AHFAAVHKVF GASNVSKLLL QIPAPKRADA VFTICYEAQA RIRDPVYGCV SHVFNLQQQV 120 ANLQAELTCL QAHLATLGQV PAPPPFPQQP QMPMATAAPF SISDLPLTLP SNIPSSVDLS 180 SLFDPSMMQS SSQWAFQQQP QQLQQQPFVP MMGDGSGGSG GGNLFGDGDL QALARELLER 240 QSAGPMPQQP PHTHC*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-35	30	134	8	111	LOB family transfactor Ramosa2.1
5ly0_B	2e-35	30	134	8	111	LOB family transfactor Ramosa2.1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the positive regulation of tracheary element (TE) differentiation. Involved in a positive feedback loop that maintains or promotes NAC030/VND7 expression that regulates TE differentiation-related genes. {ECO:0000269\|PubMed:19088331}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bradi3g22510.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FP094077	1e-105	FP094077.1 Phyllostachys edulis cDNA clone: bphylf043i04, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003571705.1	0.0	LOB domain-containing protein 30
Swissprot	O81323	8e-67	LBD30_ARATH; LOB domain-containing protein 30
TrEMBL	I1I3C6	0.0	I1I3C6_BRADI; Uncharacterized protein
STRING	BRADI3G22510.1	0.0	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3346	37	82
Representative plant	OGRP405	15	100

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45420.1	1e-58	LOB domain-containing protein 18

Link Out ? help Back to Top
Phytozome	Bradi3g22510.1.p
Entrez Gene	100833283

Publications ? help Back to Top
Rast-Somssich MI, et al. The Arabidopsis JAGGED LATERAL ORGANS (JLO) gene sensitizes plants to auxin. J. Exp. Bot., 2017. 68(11): p. 2741-2755 [PMID:28472464] Liu C,Yu H,Li L SUMO modification of LBD30 by SIZ1 regulates secondary cell wall formation in Arabidopsis thaliana. PLoS Genet., 2019. 15(1): p. e1007928 [PMID:30657769]