PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g23800.2.p
Common NameBRADI_3g23800
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family CAMTA
Protein Properties Length: 982aa    MW: 108870 Da    PI: 6.224
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g23800.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1132.41.7e-41169836118
              CG-1  36 sgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrcywlLeeelekivlvhylevk 118
                        gsl+L++rk++ryfrkD ++w+kkkdgktv+E+he+LK g+++vl+cyYah+e+n +fqrr+yw+Lee++ +ivlvhyle+k
  Bradi3g23800.2.p  16 GGSLFLFDRKVLRYFRKDAHNWRKKKDGKTVKEAHERLKSGSIDVLHCYYAHGEDNGNFQRRTYWMLEEDFMHIVLVHYLETK 98 
                       59******************************************************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143759.4681103IPR005559CG-1 DNA-binding domain
SMARTSM010762.7E-42198IPR005559CG-1 DNA-binding domain
PfamPF038591.3E-341696IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.103.7E-5396483IPR013783Immunoglobulin-like fold
SuperFamilySSF812962.6E-15397483IPR014756Immunoglobulin E-set
PfamPF018331.3E-5397476IPR002909IPT domain
SuperFamilySSF484034.04E-16590693IPR020683Ankyrin repeat-containing domain
CDDcd002045.47E-13593691No hitNo description
Gene3DG3DSA:1.25.40.207.4E-17593695IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029717.449599693IPR020683Ankyrin repeat-containing domain
SMARTSM002480.013632661IPR002110Ankyrin repeat
PROSITE profilePS500888.736632664IPR002110Ankyrin repeat
SMARTSM002481800671700IPR002110Ankyrin repeat
SuperFamilySSF525409.03E-8793845IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000150.35794816IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.224795824IPR000048IQ motif, EF-hand binding site
PfamPF006120.026796815IPR000048IQ motif, EF-hand binding site
SMARTSM000150.0022817839IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.56818842IPR000048IQ motif, EF-hand binding site
PfamPF006121.9E-4820839IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0001077Molecular Functiontranscriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding
GO:0005515Molecular Functionprotein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 982 aa     Download sequence    Send to blast
MAAPEARRFA VVPHLGGSLF LFDRKVLRYF RKDAHNWRKK KDGKTVKEAH ERLKSGSIDV  60
LHCYYAHGED NGNFQRRTYW MLEEDFMHIV LVHYLETKGG KSSRARGDSD MLQAAAADSP  120
LSQIPSQTIE GESSLSGQAS EYEETESDIY SGGAGYDSFT QMQQLQNGIG PMIHTSINSS  180
YAPASSIGAY QGQQHAMAHN TNFYSSSHDN SSVVPNDSSL GLVMSGRESQ TDLSSWNEMM  240
RSDRCSIQMP RQLPVPSEQG TSAEGVGVEY LTFDEVYFDG LGLNDISAAG ADGESSWQYP  300
SAIGDLSAME NNFPQNDRPL EAVISQPFLK TKSSNLSDIL KDSFKKSDSF TRWMSKELPD  360
VEDSQIQSSS GAYWNTEEAL DQFTVAPMLS QDQLFSIVDF SPSWTYAVSK TKVFVTGRFL  420
NANEATERCK WSCMFGEVEV PAEISADGMT LHCYSPPHKP GRVPFYITCS NRLACSEVRE  480
FEFLASDPQY MDAPSPHGAT NKIYFQIRLD KLLSLGQDAY KATISNPSLE MVDLSKKICS  540
LMENSDEWSK LLKLADDNEL LTDDQQDQFA ENLIKEKLHI WLLHKVGDGG KGPSVLDYEG  600
QGVLHLAAAL GYDWAIRPTV TSGVNINFRD VHGWTALHWA AFCGRERTVV ALIALGAAPG  660
ALTDPTPDFP SGSTPADLAS ANGHRGISGF LAESSLTSHL QALNLKEANM AEISGLPGIG  720
DVTERSASQP ASGDSLGAVR NAAQAAARIY QVFRVQSFQR KQAVQYKDEK GGISDEHALS  780
LLSFKSSKPG KLDPRHAAAS RIQNKFRGWK GRKEFLLIRQ RIVKIQAHVR GHQVRKHYRK  840
IVWSVGIVEK IILRWRRRGA GLRGFRSAEG AMGSSSSGIC TNLITDKPAG DDYDFLQEGR  900
KQTEDRLQKA LARVKSMAQY PEARDQYRRI LTVVSKMQES QATQEKMLED PTEMDEGHFM  960
SEFKELWDDD APIPGYSSLH N*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g23800.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010234692.10.0calmodulin-binding transcription activator 3 isoform X3
TrEMBLA0A0Q3F9M30.0A0A0Q3F9M3_BRADI; Uncharacterized protein
STRINGBRADI3G23800.10.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64220.20.0Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains