PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g24000.1.p
Common NameBRADI_3g24000
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ERF
Protein Properties Length: 233aa    MW: 25183.6 Da    PI: 8.9685
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g24000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.57.9e-1989137355
               AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       y+GVr+++ +g+WvAeIr p++   r+r +lg+++ta+eAa a++ a+ +l+g
  Bradi3g24000.1.p  89 YRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTYDTAQEAALAYDGAAFRLRG 137
                       9******9.**********955...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003806.6E-3588151IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.8E-3188145IPR001471AP2/ERF domain
PROSITE profilePS5103222.95888145IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-2288145IPR016177DNA-binding domain
PfamPF008471.1E-1389137IPR001471AP2/ERF domain
CDDcd000187.38E-2989145No hitNo description
PRINTSPR003679.5E-1189100IPR001471AP2/ERF domain
PRINTSPR003679.5E-11111127IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MATAMDRHWR RLAASSTSPS SSSRLPASPP LGPIETEYSR LMLPPAMAAK QSTAMAHLIG  60
ANYYHLVTVA PCAMKRQGLL PALASKQLYR GVRQRHWGKW VAEIRLPRNR TRLWLGTYDT  120
AQEAALAYDG AAFRLRGDAA RLNFPGLRPP PPLHPSVHTK LDAALASAAN ELTADGADVS  180
TTGSSSSSSG QAAPLSEEMQ MLDFSEAPWD EADGFALRKY PSWEIDLDAI LS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-1984145163ATERF1
3gcc_A2e-1984145163ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g24000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126181e-50CP012618.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 10 sequence.
GenBankKJ7275151e-50KJ727515.1 Zea mays clone pUT5374 AP2-EREBP transcription factor (EREB112) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003571744.21e-167ethylene-responsive transcription factor RAP2-13
SwissprotQ9LM151e-42RA213_ARATH; Ethylene-responsive transcription factor RAP2-13
TrEMBLA0A2K2CZ471e-166A0A2K2CZ47_BRADI; Uncharacterized protein
STRINGBRADI3G24000.11e-164(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38235203
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22190.13e-33ERF family protein
Publications ? help Back to Top
  1. Ikeuchi M, et al.
    PRC2 represses dedifferentiation of mature somatic cells in Arabidopsis.
    Nat Plants, 2015. 1: p. 15089
    [PMID:27250255]
  2. Rudnik R,Bulcha JT,Reifschneider E,Ellersiek U,Baier M
    Specificity versus redundancy in the RAP2.4 transcription factor family of Arabidopsis thaliana: transcriptional regulation of genes for chloroplast peroxidases.
    BMC Plant Biol., 2017. 17(1): p. 144
    [PMID:28835225]