PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g24441.2.p
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family B3
Protein Properties Length: 120aa    MW: 13333.7 Da    PI: 10.0751
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g24441.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B344.23.4e-14291061797
                       E--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
                B3  17 vlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                        +pk+f++    g   ++s  + l++ +g + +v++++   ++  ++++GW++Fv+a++L++g f+vFk +  ++f l+v ++
  Bradi3g24441.2.p  29 LIPKNFLD-LwlGDAAAKSSSVELRSCNGCVLTVRMRILEDGK-AYFQDGWSHFVNAHQLQVGSFLVFKPV--ESF-LKVVIL 106
                       58888884.459777889999***************7766654.579**********************43..566.566665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd100175.52E-125107No hitNo description
PROSITE profilePS508639.89713109IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.6E-1319107IPR015300DNA-binding pseudobarrel domain
PfamPF023621.7E-1229107IPR003340B3 DNA binding domain
SuperFamilySSF1019361.29E-1229106IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 120 aa     Download sequence    Send to blast
MHMLLLPGSR GGRRRLAISM RHLQALLGLI PKNFLDLWLG DAAAKSSSVE LRSCNGCVLT  60
VRMRILEDGK AYFQDGWSHF VNAHQLQVGS FLVFKPVESF LKVVILDGNT MVEKVSYCK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g24441.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2K2CZ602e-82A0A2K2CZ60_BRADI; Uncharacterized protein