PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g26665.1.p
Common NameBRADI_3g26665
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family NAC
Protein Properties Length: 438aa    MW: 47946.4 Da    PI: 5.5901
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g26665.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM782.2e-24121532127
               NAM   2 ppGfrFhPtdeelvveyLkkkvegkk..leleevikevdiykvePwdLpkkvkaeek..ewyfFskrdkkya..tgkrknratksgyWkatgk 88 
                       p+G+rF P++ e++ + L  k++g++   +l++++++++i +++P +L +++k++e+   +yfFs r+  +a  +++r+ r +k+g Wka+g 
  Bradi3g26665.1.p  12 PRGYRFVPEEPEII-RLLDDKLAGRPlpYPLHNIFHDIRIRDFHPAELYEAYKEHEEdgFIYFFSIREFPTArgNKQRPARGAKHGAWKASGG 103
                       89************.99*********76677888**************8655554443244****9987666336789999999********* PP

               NAM  89 dkevlsk...kgelvglkktLvfy........kgrapkgektdWvmheyr 127
                        k+v ++   ++ +vg k tLvfy        +++ +++ ktdW mhe++
  Bradi3g26665.1.p 104 GKAVSTTttrGSVDVGQKLTLVFYdkvtttadDKSPKNTGKTDWGMHEFT 153
                       **999877767778**********8887776545666777********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.44E-306172IPR003441NAC domain
PROSITE profilePS5100527.62711173IPR003441NAC domain
PfamPF023651.3E-1212153IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 438 aa     Download sequence    Send to blast
MEDNGRTQHG FPRGYRFVPE EPEIIRLLDD KLAGRPLPYP LHNIFHDIRI RDFHPAELYE  60
AYKEHEEDGF IYFFSIREFP TARGNKQRPA RGAKHGAWKA SGGGKAVSTT TTRGSVDVGQ  120
KLTLVFYDKV TTTADDKSPK NTGKTDWGMH EFTRVIGPGN KVADLALYRL YKMSRGKKNK  180
MKAELRAATS SREAKSPNRL TASSSSCYPA GETSQFMAKQ LLDGVASSSR AHDCADEYSF  240
GVATSSAPGP SSSVVSMDGA GQHTSLLPMT TAQENYQMMT PQQQAAHHFG ATSSQQHLGC  300
PGAVVVGWSE QQLVNMAPPP PAPALDDEFD AFCAGKQLSP NWWFPVLSDL SAILKDPPML  360
KEDEDSSEYY KLNFDCDPTG PMDDEALLST IGDEMVLPSL TIEDADASNQ VRSCSDQPQP  420
LDSTNIASEQ QQHARSS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g26665.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024317174.10.0NAC domain-containing protein 22-like
TrEMBLA0A0Q3I8E20.0A0A0Q3I8E2_BRADI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35632367
Representative plantOGRP985338
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69490.14e-14NAC-like, activated by AP3/PI