PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g28003.1.p
Common NameBRADI_3g28003
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family GATA
Protein Properties Length: 214aa    MW: 24322.8 Da    PI: 9.0245
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g28003.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA25.32.1e-081241471235
              GATA  12 WRrgpdgnktLCnaCGlyyrkkgl 35 
                       W +gp+g ++LCnaCG++yr+ +l
  Bradi3g28003.1.p 124 WCEGPEGRRMLCNACGMRYRSGRL 147
                       779*****************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577167.6E-5123168No hitNo description
Gene3DG3DSA:3.30.50.109.3E-5124144IPR013088Zinc finger, NHR/GATA-type
PfamPF003202.1E-6124147IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MVLVDGLRGD AVADDLFFSG VTSRSSSTWR YLFVWSFCGS RSVPKLRFKG YFLQRLEVTA  60
AGIGEGKEEE ELEWLVDKDA FPLVETMAPK PSLVEEPRAT DESPSPRCFE QRGGAPRRGL  120
GRWWCEGPEG RRMLCNACGM RYRSGRLVPE YRPISSPTFP PGLHSNRHSR VVQMRLLPRV  180
KNLQLYYQAM MCSHTVPYSR ATWSIQSESK EHN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g28003.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0Q3FB291e-156A0A0Q3FB29_BRADI; Uncharacterized protein
STRINGSi039011m3e-35(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51693451
Representative plantOGRP6817287
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08010.24e-21GATA transcription factor 11