PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bradi3g29940.1.p

Common Name

BRADI_3g29940, LOC100825418

Organism

Brachypodium distachyon

Taxonomic ID

15368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

Dof

Protein Properties

Length: 257aa MW: 26142.1 Da PI: 9.3259

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bradi3g29940.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	99.9	1.7e-31	75	130	5	60
zf-Dof 5 alkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 ++cprC s ntkfCyynnys +qPry+C+aCrr+Wt+GG+lr+vPvGggr+ +++ Bradi3g29940.1.p 75 PRDCPRCRSGNTKFCYYNNYSRKQPRYLCRACRRHWTEGGTLRDVPVGGGRKSRRN 130 578***********************************************876654 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	7.6E-29	76	129	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	25.77	76	130	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	78	114	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	9.0E-19	83	127	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 257 aa Download sequence Send to blast
MASPFLAGSS SSSASSPLSY MIPSSSLALA AQGQGQGFLS CGVLAQQGPQ GDAVGVGAPR 60 QGGTGRHAGL PRPPPRDCPR CRSGNTKFCY YNNYSRKQPR YLCRACRRHW TEGGTLRDVP 120 VGGGRKSRRN NGAGSRKAAA TKASASPSTA DAAAAAGVDG SLVVPADVLR QMLFFQPAGF 180 EGGYGIDMGA WQQQQMAAAA PNATKAPQGV GGEVGAGVEG TSASAADGVN CGAGMQFWSG 240 GWQQMQDDMP GFDGTF*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bradi3g29940.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AM084361	2e-71	AM084361.1 Hordeum vulgare subsp. vulgare dof13 gene for dof zinc finger protein 13.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003571940.1	0.0	dof zinc finger protein 1
TrEMBL	I1I532	0.0	I1I532_BRADI; Uncharacterized protein
STRING	BRADI3G29940.1	0.0	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP140	37	367
Representative plant	OGRP38	17	445

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G52440.1	1e-20	Dof family protein

Link Out ? help Back to Top
Phytozome	Bradi3g29940.1.p
Entrez Gene	100825418