PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g30457.4.p
Common NameBRADI_3g30457, LOC100823187
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family Trihelix
Protein Properties Length: 652aa    MW: 69908.6 Da    PI: 6.4696
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g30457.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix46.41.1e-143543487
          trihelix 34 vskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87
                      v++k++e+g++r++k+Ckek+en++k+yk++k+++ +r  ++ +t+++f+qlea
  Bradi3g30457.4.p  3 VGRKLAEEGYRRNAKKCKEKFENVHKYYKRTKDSRAGR--NDGKTYRFFQQLEA 54
                      7899********************************97..56668*******85 PP
2trihelix109.91.5e-34337422187
          trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                       rW+k ev+aLi++r+++++r++++  k+plWee+s+ mr+ g++rs+k+Ckekwen+nk++kk+ke++kkr +e+s+tcpyf+qlea
  Bradi3g30457.4.p 337 RWPKAEVHALIQLRSNLDTRYQEAGPKGPLWEEISAGMRRMGYSRSSKRCKEKWENINKYFKKVKESNKKR-PEDSKTCPYFHQLEA 422
                       8*********************************************************************8.99***********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138378.2E-10455No hitNo description
PROSITE profilePS500907.48330394IPR017877Myb-like domain
SMARTSM007170.0053334396IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.6E-4335393IPR009057Homeodomain-like
PfamPF138372.5E-23336423No hitNo description
CDDcd122031.99E-29337401No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010192Biological Processmucilage biosynthetic process
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 652 aa     Download sequence    Send to blast
MVVGRKLAEE GYRRNAKKCK EKFENVHKYY KRTKDSRAGR NDGKTYRFFQ QLEALQGATP  60
GAGASSVPPP ATAVRAPAEP PPQPVVAGAM PTPMGVGNLS FSTSNTEEFS EDEDEEDDSD  120
DEGTDDMAVV GNKRKRMSSD GVAAAGGHNN KKMMRFFEGL MRQVMERQEA MQQRFLEAIE  180
KREQDRMIRE EAWRRQEMAR LAREQETLAQ ERAMAASRDA AVLGFIQKIT GQSVPMPMAP  240
PPPSIAFMPP PPAGSHPTPI SFSAAPPSSS QSPATQASPR PQKPPMPLPT PAPQKTPVPA  300
TPPPQQQSGG MEMVVSAPAG GELQLHDGGS GSASSSRWPK AEVHALIQLR SNLDTRYQEA  360
GPKGPLWEEI SAGMRRMGYS RSSKRCKEKW ENINKYFKKV KESNKKRPED SKTCPYFHQL  420
EALYRNKQQA ALTSPSAAAA PLPALAAPPP PEPFTVAAPI SQTPPTTTHA LQQPAAAKNG  480
AGNGHGNGNG SGVAACSEGG SVSAGGMQAS NGFFGEAGVA AKKPEGMMKE TIMEQRQQAQ  540
AAPISSSYNN RAGVVDSDNS MDDEDDYDDE DEEDDDDDDV DGNKMQYEIQ FQSQQHHQLH  600
QQHHQHNNHN VVRPNAGAAG GGNQPGAAAP PSAASAAAAT TTAGSFLGMV Q*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00243DAPTransfer from AT1G76880Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g30457.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0252961e-117AC025296.10 Oryza sativa chromosome 10 BAC OSJNBa0076F20 genomic sequence, complete sequence.
GenBankAP0149661e-117AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence.
GenBankCP0126181e-117CP012618.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 10 sequence.
GenBankCT8305451e-117CT830545.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA218F06, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003574172.10.0trihelix transcription factor GTL1 isoform X1
RefseqXP_010234894.10.0trihelix transcription factor GTL1 isoform X1
SwissprotQ391171e-48TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBLA0A2K2D0790.0A0A2K2D079_BRADI; Uncharacterized protein
STRINGBRADI3G30457.10.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.11e-52Trihelix family protein