PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g32090.1.p
Common NameBRADI_3g32090, LOC100823796
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family MIKC_MADS
Protein Properties Length: 228aa    MW: 25690.5 Da    PI: 9.7545
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g32090.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF94.35.7e-30959151
                      S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
            SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                      krien++ rqvtfskRrng+lKKA+ELSvLCdaeva+++fs++g+lye++s
  Bradi3g32090.1.p  9 KRIENTTSRQVTFSKRRNGLLKKAFELSVLCDAEVALVVFSPRGRLYEFAS 59
                      79***********************************************86 PP
2K-box60.28.6e-2178172599
             K-box   5 sgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 
                        +k++++++ ++ + +   L k++e L+ ++R++lGe+L++++ +eL+ Le ++eksl  iR+kK++ll +qi +l++ke +l ++n++Lr+k
  Bradi3g32090.1.p  78 VNKKTAQQDIQQIRADTVGLAKKLEALEDSKRKILGENLGECTTQELHILEAKIEKSLHIIRAKKSQLLERQIAKLKEKETMLLKDNEELREK 170
                       445588999999999****************************************************************************99 PP

             K-box  98 le 99 
                        +
  Bradi3g32090.1.p 171 QQ 172
                       75 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004324.2E-40160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.707161IPR002100Transcription factor, MADS-box
CDDcd002656.45E-39376No hitNo description
PRINTSPR004045.8E-31323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.31E-31384IPR002100Transcription factor, MADS-box
PfamPF003195.9E-271057IPR002100Transcription factor, MADS-box
PRINTSPR004045.8E-312338IPR002100Transcription factor, MADS-box
PRINTSPR004045.8E-313859IPR002100Transcription factor, MADS-box
PfamPF014862.1E-2183170IPR002487Transcription factor, K-box
PROSITE profilePS5129712.51787177IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000060Biological Processprotein import into nucleus, translocation
GO:0009409Biological Processresponse to cold
GO:0009739Biological Processresponse to gibberellin
GO:0009911Biological Processpositive regulation of flower development
GO:0010077Biological Processmaintenance of inflorescence meristem identity
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008134Molecular Functiontranscription factor binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MVRGKTELKR IENTTSRQVT FSKRRNGLLK KAFELSVLCD AEVALVVFSP RGRLYEFASS  60
ASLQKTIDRY KAYTKDNVNK KTAQQDIQQI RADTVGLAKK LEALEDSKRK ILGENLGECT  120
TQELHILEAK IEKSLHIIRA KKSQLLERQI AKLKEKETML LKDNEELREK QQHLAALMVV  180
PSLNHVALSP LQPEPEPEPS SDAIDTVETE LYIGLPGRER SSNRQSG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3mu6_A1e-17373271Myocyte-specific enhancer factor 2A
3mu6_B1e-17373271Myocyte-specific enhancer factor 2A
3mu6_C1e-17373271Myocyte-specific enhancer factor 2A
3mu6_D1e-17373271Myocyte-specific enhancer factor 2A
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00076ChIP-chipTransfer from AT2G45660Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g32090.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF4693200.0KF469320.1 Brachypodium distachyon MADS-box transcription factor 25 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001288329.11e-165MADS-box transcription factor 56-like
RefseqXP_010233635.11e-165MADS-box transcription factor 56-like isoform X1
SwissprotA2Z9Q71e-107MAD56_ORYSI; MADS-box transcription factor 56
TrEMBLI1I5Q01e-164I1I5Q0_BRADI; MADS-box transcription factor 25
STRINGBRADI3G32090.11e-164(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP14133379
Representative plantOGRP1617761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45660.14e-68AGAMOUS-like 20
Publications ? help Back to Top
  1. Wei B, et al.
    Genome-wide analysis of the MADS-box gene family in Brachypodium distachyon.
    PLoS ONE, 2014. 9(1): p. e84781
    [PMID:24454749]