PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g32140.1.p
Common NameBRADI_3g32140, LOC100830833
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family B3
Protein Properties Length: 268aa    MW: 29172.3 Da    PI: 10.4565
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g32140.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B392.23.8e-2932119184
                       EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                       f+kv tpsdv+k++rlv+pk++ae++      +g  ++++ l++e + g+ W+++++y+++s++yv+tkGW++Fvk+++L +gD v+F +
  Bradi3g32140.1.p  32 FEKVVTPSDVGKLNRLVIPKQHAERYfpldfdKG--NGGIILSFEERGGKAWRFRYSYWNSSQSYVMTKGWSRFVKDKRLLAGDAVLFAR 119
                       99***************************96544..4899************************************************83 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.107.4E-3924124IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.27E-2829119IPR015300DNA-binding pseudobarrel domain
CDDcd100172.60E-2630117No hitNo description
PfamPF023622.7E-2632119IPR003340B3 DNA binding domain
SMARTSM010195.7E-1932133IPR003340B3 DNA binding domain
PROSITE profilePS5086313.95832143IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MEFLPAAAPA EDSEERQSRA ASAAEMEKEH MFEKVVTPSD VGKLNRLVIP KQHAERYFPL  60
DFDKGNGGII LSFEERGGKA WRFRYSYWNS SQSYVMTKGW SRFVKDKRLL AGDAVLFARG  120
VAHDSERGGH GHRRFFIDFR RRLRPVAAFP PAPAPPLPSV PLCRAWPWDG VSGGDRRRVL  180
FLRQQVPTAA AAVLKSSSVV PAAAGALLEP ASRQKRVRLF GVNLDCPACP PAAAASTLLQ  240
QKQLPSPSSS SSSSTAGKEA CSLDLGL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A1e-50271423113B3 domain-containing transcription factor NGA1
5os9_B1e-50271423113B3 domain-containing transcription factor NGA1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g32140.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0741963e-36AC074196.14 Oryza sativa chromosome 10 BAC OSJNBa0040D23 genomic sequence, complete sequence.
GenBankAP0149663e-36AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence.
GenBankCP0126183e-36CP012618.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 10 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014756192.10.0putative B3 domain-containing protein Os10g0537100
SwissprotQ8LNN82e-77Y1071_ORYSJ; Putative B3 domain-containing protein Os10g0537100
TrEMBLI1I5Q70.0I1I5Q7_BRADI; Uncharacterized protein
STRINGBRADI3G32140.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58337168
Representative plantOGRP36516108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01030.14e-50B3 family protein
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]