PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g32170.3.p
Common NameBRADI_3g32170
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family MYB_related
Protein Properties Length: 211aa    MW: 23088.3 Da    PI: 8.7616
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g32170.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding31.34.6e-102972247
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                      g +T  E+ ++++   + G+  W+ Ia  ++ gRt+  +k++w++ 
  Bradi3g32170.3.p 29 GHFTLAEETIILEMYSKRGSC-WSVIATQLP-GRTDLAVKNYWNST 72
                      6799*****************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500904.263122IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.603.1E-4622IPR009057Homeodomain-like
SuperFamilySSF466891.8E-19877IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.8E-192377IPR009057Homeodomain-like
PROSITE profilePS5129418.6872377IPR017930Myb domain
SMARTSM007172.1E-82775IPR001005SANT/Myb domain
PfamPF002497.5E-92972IPR001005SANT/Myb domain
CDDcd001677.29E-73173No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MSWIAGLQRC GRSCRSRWLN YLRPGLKHGH FTLAEETIIL EMYSKRGSCW SVIATQLPGR  60
TDLAVKNYWN STLAKRLPGA RTTARRRRSR PSSSTTSDAR KPDEIALVAH DDESATTGSP  120
CHATVVEARP LLAAATVSAV KEEVSGAARA ERKPAVAREN APPRRGDQAG AMDMVCAPAS  180
PMPLAIMEPD LPWLAGFDEI DSFLPWFDDW *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-1697740108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g32170.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014756015.11e-153transcription factor MYB87
TrEMBLA0A2K2D0I41e-152A0A2K2D0I4_BRADI; Uncharacterized protein
STRINGBRADI3G32170.11e-118(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP122282638
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56110.11e-30myb domain protein 103