PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g32890.1.p
Common NameBRADI_3g32890, LOC100822245
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family GRAS
Protein Properties Length: 657aa    MW: 68255.3 Da    PI: 5.9877
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g32890.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS282.51.2e-862796552374
              GRAS   2 velLlecAeavssgdlelaqalLarlsel..aspdg.d..pmqRlaayfteALaarlar..svselykalppsetseknsseelaalklfsev 87 
                       ve+L e+A+  ++gd++ a+++Larl+ +  a+p++ +  p+ R a+yf+eAL+  l+    + e y + +p ++++++++ +l a+k+fse+
  Bradi3g32890.1.p 279 VEQLAEAAKLAEAGDAHGAREILARLNYRlpAAPAAgNtpPLLRSAFYFKEALRLALSTtpAGGEAYYSPTPPASTPYDVVLKLGAYKAFSEA 371
                       789************************999966655235689***************9855556677777777777899************** PP

              GRAS  88 sPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp....egppslRiTgvgspesgskeeleetgerLakfAeelgvpf 176
                       sP+l f+hlt+ qa+l+++    +vH++Dfdi++G QW++L+q+Las +    + ++ l++T+++sp++++  el+ ++e+L++fA+ lgv f
  Bradi3g32890.1.p 372 SPVLPFAHLTCVQAVLDELGDRGCVHVLDFDIGMGEQWASLMQELASSSqrrtSAAAALKVTALVSPATHHPLELQLIHENLSSFAADLGVLF 464
                       **********************************************64433357889************************************ PP

              GRAS 177 efnvlvakrledleleeLrvkp.gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalf 268
                       +f+++ +++l+  +l ++     +EalaV+l +   +           +++vL+lvk+l +kvvv v++  d+ + +F++++++a++  + l+
  Bradi3g32890.1.p 465 QFSAFNVETLDPADLVSIVAGAgDEALAVHLPVGAAHAA--------STPAVLRLVKRLGAKVVVAVDRGGDRAELPFAAHLFQAFQSAVFLL 549
                       ****9777777777777766668**********999997........4678****************************************** PP

              GRAS 269 dsleaklpres.eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee.sgslv 359
                       +s++a l++++ +++  vEr+l++++++++v +++++r      ++ Wr+ + +aGF p++ s++a++qa++ll+kv+++g+rve +  gsl+
  Bradi3g32890.1.p 550 ESIDAVLGSADpDTAGRVERFLVQPAVEQCVVARHRDR--ASPGMMPWRAVFAAAGFAPAQASSFAESQAESLLHKVPVRGFRVERRaPGSLC 640
                       ********99989999******************9995..45679****************************************77479999 PP

              GRAS 360 lgWkdrpLvsvSaWr 374
                       l+W++ +LvsvSaWr
  Bradi3g32890.1.p 641 LYWQRAELVSVSAWR 655
                       **************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098538.652252634IPR005202Transcription factor GRAS
PfamPF035144.2E-84279655IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 657 aa     Download sequence    Send to blast
MRGMPFAGES HAGIQLLLLQ QQQQGVLAGG GKVSSGGALW EPTSVLDLRH SPSPSPPVSS  60
ASTLSSSEVA ALAGGDAKNV SPTPQQAWPG GGGGEDAAGV KEEWAHQLAP LDNMGLAPCD  120
DWDDAAAAPP SGPDSSFLRW IIAGGEDGGV LMDPPVLELD HATSMMSSPA AAAFGPPNLS  180
SSFAPAMEDT KPQQPFGHGP GFLLHHPQPH AAFFGSHPSF DSPPAATKRH HPMAAAPPPK  240
LPPYPSHHLA PASGGGGFVL KQPKAAAASQ DEAAAMAAVE QLAEAAKLAE AGDAHGAREI  300
LARLNYRLPA APAAGNTPPL LRSAFYFKEA LRLALSTTPA GGEAYYSPTP PASTPYDVVL  360
KLGAYKAFSE ASPVLPFAHL TCVQAVLDEL GDRGCVHVLD FDIGMGEQWA SLMQELASSS  420
QRRTSAAAAL KVTALVSPAT HHPLELQLIH ENLSSFAADL GVLFQFSAFN VETLDPADLV  480
SIVAGAGDEA LAVHLPVGAA HAASTPAVLR LVKRLGAKVV VAVDRGGDRA ELPFAAHLFQ  540
AFQSAVFLLE SIDAVLGSAD PDTAGRVERF LVQPAVEQCV VARHRDRASP GMMPWRAVFA  600
AAGFAPAQAS SFAESQAESL LHKVPVRGFR VERRAPGSLC LYWQRAELVS VSAWRC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-2431065532375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g32890.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010234984.10.0scarecrow-like protein 6
TrEMBLA0A0Q3LZR90.0A0A0Q3LZR9_BRADI; Uncharacterized protein
STRINGBRADI3G32890.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP67232954
Representative plantOGRP17501242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.13e-64GRAS family protein