PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g33320.3.p
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family NAC
Protein Properties Length: 359aa    MW: 39019.1 Da    PI: 7.1838
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g33320.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM61.62.5e-19411691127
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykvePwdLpkkvkaeekewyfFskrdkkya.....tgkrknr.atksgyWkat 86 
                       lppG+ F+Pt +e v   L++ ++g++l+ ++  + + ++y + P +L+++++++ ++w+f s+++ +++       +r+ r +++ gyW+  
  Bradi3g33320.3.p  41 LPPGVYFSPTRNESV-GILNRWIAGEPLHDTHGfVFHDNVYGASPDELRASIRGRVRSWWFLSETKFQSRknpgaGARRADRrVATGGYWRMD 132
                       79*************.67*********65544438888***********99999999**9998876555422232223555548889****98 PP

               NAM  87 gkdkevlskkgelvglkktLvfykgrapkgektdWvmheyr 127
                        +  e+ +    + g+kktL fy g  +k++kt W+m+e++
  Bradi3g33320.3.p 133 QSRMELAA----VDGVKKTLKFYVGPGKKASKTPWLMEEFT 169
                       88777777....789************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.83E-1835189IPR003441NAC domain
PROSITE profilePS5100523.10741190IPR003441NAC domain
PfamPF023653.4E-1242169IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MAIKKRQTKK PSSASGISSS VVQAMAEMSP AAANPLQPVQ LPPGVYFSPT RNESVGILNR  60
WIAGEPLHDT HGFVFHDNVY GASPDELRAS IRGRVRSWWF LSETKFQSRK NPGAGARRAD  120
RRVATGGYWR MDQSRMELAA VDGVKKTLKF YVGPGKKASK TPWLMEEFTS ALDDGTGKSG  180
APALYRLYLT PNATNDELRE IFGEDGVRYG PDGQKKPARA LVPPDWFDSV AALLPPGRVR  240
RPLDHQPQGQ GAPPPGLMNY HGLHLGPAPP GNVVGLYDQV WEAPPPPPPA YSPGILDETM  300
PVNGLGQYDE QQGQFFSQTA PPPPPPPPAS PGLSAEMPVD DLSMPFDEFL QWINENPV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g33320.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010236658.30.0NAC domain containing protein 52
TrEMBLA0A2K2D0U10.0A0A2K2D0U1_BRADI; Uncharacterized protein
STRINGBRADI3G33320.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP135701724
Representative plantOGRP1453134
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G55210.16e-09NAC domain containing protein 63