PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bradi3g33630.1.p

Common Name

BRADI_3g33630, LOC100825946

Organism

Brachypodium distachyon

Taxonomic ID

15368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

Trihelix

Protein Properties

Length: 325aa MW: 34298.8 Da PI: 10.1399

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bradi3g33630.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	71.4	1.7e-22	61	150	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm......rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +Wt++e+laLiea+r+++e+lr+g+l++++W+ev+ ++ + +s +qC++k+e+l+kry++++ ++ +r+++ ++p+f l+ Bradi3g33630.1.p 61 CWTHEETLALIEAYRDKWEALRKGNLRAADWDEVAGAVtarcghFPTATYKSGVQCRHKIEKLRKRYRAERSRSAGRSKG--PKWPFFPLLH 150 8***********************************9988887788899********************98443..47**9886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	5.8E-22	60	151	No hit	No description
SMART	SM00595	3.9E-4	69	153	IPR006578	MADF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 325 aa Download sequence Send to blast
MSSSSSPKPD AVSSPELPPL AAPNIAAAAA AAAAAASSSG GMGLSGSAVG VGSGRRLPPP 60 CWTHEETLAL IEAYRDKWEA LRKGNLRAAD WDEVAGAVTA RCGHFPTATY KSGVQCRHKI 120 EKLRKRYRAE RSRSAGRSKG PKWPFFPLLH DLAGGGAPDP SPNPIIKIKP RAGGGTPASP 180 SSPMSSPSSE EAGRSRSLHG LISNGGGGSG LRFTIPKGSR TKPVGAPREA RADRGDEDPE 240 AEAMAEVASA LRAVGEGFLR MEERRLEMSL QMEKERMDSE MKRTQTLLDA QQLFVEAFLG 300 KQQQPHHKKS KLAAFATAAA MEED*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bradi3g33630.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003574347.1	0.0	trihelix transcription factor ASIL2
TrEMBL	I1I686	0.0	I1I686_BRADI; Uncharacterized protein
STRING	BRADI3G33630.1	0.0	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5689	32	50
Representative plant	OGRP4059	11	22

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44730.1	5e-28	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Bradi3g33630.1.p
Entrez Gene	100825946