PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g33670.1.p
Common NameBRADI_3g33670, LOC104584190
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ERF
Protein Properties Length: 123aa    MW: 13239 Da    PI: 10.6515
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g33670.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2347.4e-112673356
               AP2  3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56
                      ++GV++ + +gr++ +I+       + ++ +lg f+ta eAa+ ++aa+ +l+g+
  Bradi3g33670.1.p 26 FRGVCRQP-SGRYRGQIKR------SgTTLHLGIFDTAHEAARGYDAAAAQLHGA 73
                      8******9.7******999......44*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103214.5652580IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.8E-162580IPR001471AP2/ERF domain
SMARTSM003802.6E-152586IPR001471AP2/ERF domain
PfamPF008471.3E-62672IPR001471AP2/ERF domain
PRINTSPR003671.9E-52637IPR001471AP2/ERF domain
SuperFamilySSF541713.99E-152681IPR016177DNA-binding domain
PRINTSPR003671.9E-56282IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 123 aa     Download sequence    Send to blast
MVVTDEAAAG RRKKKTRPAP EARTEFRGVC RQPSGRYRGQ IKRSGTTLHL GIFDTAHEAA  60
RGYDAAAAQL HGAKAITNFK RRQSPAPTAA AAHNDGEAMD FSGFPEVPVE LRLLPYGILQ  120
LP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g33670.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010236663.13e-85ethylene-responsive transcription factor 9
TrEMBLI1I6907e-84I1I690_BRADI; Uncharacterized protein
STRINGBRADI3G33670.11e-84(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP3721823
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44210.14e-15erf domain protein 9