PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g33680.2.p
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family NAC
Protein Properties Length: 227aa    MW: 24849.8 Da    PI: 5.9119
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g33680.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM73.26.4e-23111531128
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkya.tgkrknr.atksgyWkatgkdke 91 
                       l pGf+F+P+deelv ++L +++ g+kl+le +i e d +++ Pw+L +  ++++ e +fF+  +  +  +++r++r     g W+ +g++ +
  Bradi3g33680.2.p  11 LSPGFKFNPEDEELVEYFLLPRLLGQKLPLEGMIYEDDPLRAPPWKLLSD-HGRKGEAFFFAAGHAIHGgSSRRQKRtCEGGGCWEGQGQKGR 102
                       579***************************999**************733.344558999999888776246677884445899****99776 PP

               NAM  92 vlsk..kgel...............vglkk.tLvfykgrapkgektdWvmheyrl 128
                          +  +  +               v  kk +L f+  + ++g +t Wvmhey +
  Bradi3g33680.2.p 103 KDGNgdT--NnklrvvdsescgameVEWKKyMLNFH-IDGEEG-STGWVMHEYVV 153
                       6655441..234566777777777766665156666.566665.8********76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019419.94E-279158IPR003441NAC domain
PROSITE profilePS5100524.60211173IPR003441NAC domain
PfamPF023657.5E-1813152IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MEAADELGLG LSPGFKFNPE DEELVEYFLL PRLLGQKLPL EGMIYEDDPL RAPPWKLLSD  60
HGRKGEAFFF AAGHAIHGGS SRRQKRTCEG GGCWEGQGQK GRKDGNGDTN NKLRVVDSES  120
CGAMEVEWKK YMLNFHIDGE EGSTGWVMHE YVVTAPACLV SPTSIRAYRI RLSGHGKKRK  180
REAEDYCGGA DEDANGAKTE ESFAGGQPSA NIPPFCSRAN QIFVAH*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g33680.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024317200.11e-142NAC domain-containing protein 83-like
TrEMBLA0A2K2D0W21e-167A0A2K2D0W2_BRADI; Uncharacterized protein
STRINGBRADI3G33680.11e-141(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP80222137
Representative plantOGRP1783122