PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g34134.1.p
Common NameBRADI_3g34134
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C3H
Protein Properties Length: 170aa    MW: 18939.7 Da    PI: 8.9469
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g34134.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH33.28.7e-115681126
                      --S---SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                      ykt+lC  f  +G+C yGdrC+FaHg
  Bradi3g34134.1.p 56 YKTKLCVKFEINGHCMYGDRCTFAHG 81
                      9************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.101.3E-164988IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.14E-105486IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.465583IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-65582IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-75681IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 170 aa     Download sequence    Send to blast
MERENNALDL TPKHVLEQSG GRPLRCLPQP PPQPSEAITL VGSPERLGQP PTKIYYKTKL  60
CVKFEINGHC MYGDRCTFAH GSTELRRPSL ATHGFAEGLA IRNPWEMRSE IPLARAAPGR  120
AFPPVPAPRM RDIPRQMPRE EEGGAKVSNL ERLSWKKTSG IYGDWPEES*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g34134.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024317904.11e-122zinc finger CCCH domain-containing protein 1-like
TrEMBLA0A0Q3HWU31e-121A0A0Q3HWU3_BRADI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP133642030
Representative plantOGRP10392510
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19360.17e-13C3H family protein