PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g34670.4.p
Common NameBRADI_3g34670, LOC100829506
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family CPP
Protein Properties Length: 539aa    MW: 59823.6 Da    PI: 8.6854
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g34670.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR45.91.2e-14146184341
               TCR   3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 
                       +k+C+Ck+skClk+YC+Cfa+g++C+++C+C++C+N+ +
  Bradi3g34670.4.p 146 RKNCKCKNSKCLKLYCDCFASGRYCNDDCNCKNCCNDVS 184
                       799*********************************876 PP
2TCR50.54.1e-16231271141
               TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 
                       k++kgC+Ck+s+ClkkYCeCf++++ Cse+CkC+dCkN e+
  Bradi3g34670.4.p 231 KHMKGCQCKRSECLKKYCECFQSNVLCSENCKCTDCKNYES 271
                       589***********************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011143.7E-11144185IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163435.468145271IPR005172CRC domain
PfamPF036385.7E-10147182IPR005172CRC domain
SMARTSM011143.1E-17231272IPR033467Tesmin/TSO1-like CXC domain
PfamPF036382.4E-12234269IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 539 aa     Download sequence    Send to blast
MDKPPNHPHD SVQLDFASVF YAGKPEIAAT AAALSHALGP PRQPPHRQLM PLKVKVQSSL  60
PPWPPVLWPT AIAGKHPMPF PTPPPAKKLQ VQRPLQQASP FLTQLLPKME VPILLPMHAT  120
SVGVMLNSRY PWSETSSESI NGTPRRKNCK CKNSKCLKLY CDCFASGRYC NDDCNCKNCC  180
NDVSHETARQ DAINAVMERN PVAFMPKIGN IPRHAAQNRE YRAAEGPRVG KHMKGCQCKR  240
SECLKKYCEC FQSNVLCSEN CKCTDCKNYE SSEDMKEMRR MTQQHGVYVH HVQNLALKGM  300
IGPSAVLPRA AEKFSGLSVA SLGRDQPINN NDSSQVLSPL LTSVPTEDTE SSVRLGRHGV  360
TYRTLLADII QIEDVNVLCK VLVLVSRQAA GAFLDSGFKE NTNIKKLDRA ESHIPSTNHD  420
RKAVQKQHDE QLCSLGNSLI AVPLSEGRAG MPRSDPSDTW KDNRRSVSPG TQALMCNEQD  480
MFVHTSSVAG AILSTTKENL SEIYIEQEKR VLTNLLDFLR ELAKSGRLQE EKRSLRCH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A3e-2614627811130Protein lin-54 homolog
5fd3_B3e-2614627811130Protein lin-54 homolog
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g34670.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010235073.10.0protein tesmin/TSO1-like CXC 7 isoform X1
RefseqXP_014755713.10.0protein tesmin/TSO1-like CXC 7 isoform X1
TrEMBLA0A2K2D1330.0A0A2K2D133_BRADI; Uncharacterized protein
STRINGBRADI3G34670.10.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.11e-54Tesmin/TSO1-like CXC domain-containing protein