PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g35280.1.p
Common NameBRADI_3g35280, LOC100840535
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family LBD
Protein Properties Length: 405aa    MW: 43663.7 Da    PI: 4.6475
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g35280.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260121.74e-3872170199
            DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 
                       aCaaCk++rrkC++dC+lapyfpa+q+++f n+h+lFG+sn+lk+l+++++e  ++am++l+y+Ae+ra dPv G++++il+l++  e ++ae
  Bradi3g35280.1.p  72 ACAACKYQRRKCNPDCPLAPYFPADQQRRFLNAHRLFGVSNILKTLRRIKPELCDAAMNALIYQAEMRAIDPVGGCYRIILDLENTFELESAE 164
                       7******************************************************************************************** PP

            DUF260  94 lallke 99 
                       la+l +
  Bradi3g35280.1.p 165 LAALLH 170
                       998765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.16971172IPR004883Lateral organ boundaries, LOB
PfamPF031953.1E-3672167IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 405 aa     Download sequence    Send to blast
MTSPSSAASS LHITITSNPS SSTITNNTNA NNPKPHHHHL PSHSTARPGP NNNNPGGGGG  60
GGGGGSSSTN QACAACKYQR RKCNPDCPLA PYFPADQQRR FLNAHRLFGV SNILKTLRRI  120
KPELCDAAMN ALIYQAEMRA IDPVGGCYRI ILDLENTFEL ESAELAALLH HLELCRQAAA  180
AAASGVPPPD VMDAADLDLE VTSSNHHQPS LAMDAVVDID TLYVGQEAIR DDNNADHGNN  240
NNSPHAQDHG EQQHQQQQQL YDYFYYETKN NGAGAAEDAS SNKPGSVDIN VDVMQHFDYD  300
SGCDAVDDHS YKLAVELAPM MSSGGLAGQH HQLEEEHYGQ IDHKEYEMKV ASFVDAFDVN  360
ADIAASVKEE IDQEEDANYN MALAEESQLA ESSHCRLGLG FSSL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A3e-217318712123LOB family transfactor Ramosa2.1
5ly0_B3e-217318712123LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g35280.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003572169.10.0LOB domain-containing protein 20
TrEMBLI1I6U60.0I1I6U6_BRADI; Uncharacterized protein
STRINGBRADI3G35280.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP52283461
Representative plantOGRP55241021
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13850.13e-33LOB domain-containing protein 22