PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g36610.1.p
Common NameBRADI_3g36610, LOC100835858
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bHLH
Protein Properties Length: 368aa    MW: 38503.7 Da    PI: 5.806
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g36610.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH47.33.8e-15136182354
                       HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
               HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                       r+h+e+ErrRR+riNs +++Lr+llP+      +K +Ka+ L +++e++k+L
  Bradi3g36610.1.p 136 RSHSEAERRRRQRINSHLARLRSLLPNT-----TKTDKASLLAEVIEHVKEL 182
                       78*************************9.....8****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088817.288133182IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-12136182IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.84E-14136185No hitNo description
Gene3DG3DSA:4.10.280.101.1E-14137189IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.53E-15137192IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.4E-14139188IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS516718.772234309IPR002912ACT domain
SuperFamilySSF550211.83E-6236286No hitNo description
Gene3DG3DSA:3.30.70.2601.4E-7236284No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MWEGAGAVHG SHEALLLQAT GGDRSIDHGQ YSSGLLPWQL GPSSAGPSYM IPSAPFGVPE  60
SGGSFGDGFA DGGGLQLQGQ GQHQYGGLFG LEPPTELHGP SSSRMMVSGL LGSLQAELGR  120
MTAKEIMDAK ALAASRSHSE AERRRRQRIN SHLARLRSLL PNTTKTDKAS LLAEVIEHVK  180
ELKRQTSAIM AVSSASGEDH AAAPAVQRQL LLPTEADELE VDAAAGEDGR LVVRASLCCE  240
DRPGLIPDVA RALAALRLRA RRAEIATLGG RVRNVLLITA ADEDEEEEGD GGREEEDEDE  300
RAGAAGSHRR RHELVASIQE ALRGVMDRKG AGASSDTNTT SSSGGGGGGG SSIKRQRVNG  360
AREQGSF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g36610.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1096161e-105AK109616.1 Oryza sativa Japonica Group cDNA clone:002-137-H01, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003572226.10.0transcription factor AIG1
TrEMBLA0A0Q3FJR70.0A0A0Q3FJR7_BRADI; Uncharacterized protein
STRINGBRADI3G36610.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19183898
Representative plantOGRP37715106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.16e-48bHLH family protein