PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g36670.2.p
Common NameBRADI_3g36670
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family NAC
Protein Properties Length: 344aa    MW: 38094.4 Da    PI: 5.4076
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g36670.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1501.1e-46101451128
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk......kvka..eekew.yfFskrdkkyatgkrknratksgyWk 84 
                       lppGfrF Ptdeelv++yL +k+ + +++   +i++vd+yk+ePwdLp+      +  a  + +e+ yfF+kr+ +y++g r++r+t+ gyWk
  Bradi3g36670.2.p  10 LPPGFRFFPTDEELVTFYLGNKAMDASFTS-AAIRDVDLYKSEPWDLPStgkaamT--AgsGGDECyYFFCKRSIRYPSGARARRSTAGGYWK 99 
                       79*************************999.78**************954666542..2334445549************************* PP

               NAM  85 atgkdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                       +tgkdk+v+++  +++lvg+kktLvf++grap+gekt+Wvmhey l
  Bradi3g36670.2.p 100 STGKDKDVHCSreSNRLVGTKKTLVFHRGRAPRGEKTSWVMHEYML 145
                       *********98666677***************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.57E-537171IPR003441NAC domain
PROSITE profilePS5100554.50710171IPR003441NAC domain
PfamPF023656.8E-2511144IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MEGEWQMGCL PPGFRFFPTD EELVTFYLGN KAMDASFTSA AIRDVDLYKS EPWDLPSTGK  60
AAMTAGSGGD ECYYFFCKRS IRYPSGARAR RSTAGGYWKS TGKDKDVHCS RESNRLVGTK  120
KTLVFHRGRA PRGEKTSWVM HEYMLLAGQR SRNACSRADQ GEWVICRVFV KKPPSDHRTL  180
ERDLGQGEAL HGQTSPGHLL PMDSDGCNGE EAAERAASQV LSDDPWDTNN RAMTSHENDA  240
LVHHVDPSLI VDRPSCASPF WPLYDDDQLG PYCSTSTLHI LQQRSSLISA TDDLPELLEY  300
GGYDIPKRGA SPGSELTSSS EAEISYISVV PLHLDESYWN FGC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-421017217166NO APICAL MERISTEM PROTEIN
1ut4_B2e-421017217166NO APICAL MERISTEM PROTEIN
1ut7_A2e-421017217166NO APICAL MERISTEM PROTEIN
1ut7_B2e-421017217166NO APICAL MERISTEM PROTEIN
4dul_A2e-421017217166NAC domain-containing protein 19
4dul_B2e-421017217166NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g36670.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024316300.10.0NAC domain-containing protein 46
TrEMBLA0A2K2D1J30.0A0A2K2D1J3_BRADI; Uncharacterized protein
STRINGBRADI3G36670.10.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24430.25e-58NAC domain containing protein 38