PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bradi3g37043.1.p

Common Name

BRADI_3g37043

Organism

Brachypodium distachyon

Taxonomic ID

15368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

ZF-HD

Protein Properties

Length: 124aa MW: 12823.5 Da PI: 8.1262

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bradi3g37043.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	90.1	2.1e-28	27	81	2	57
ZF-HD_dimer 2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57 ++vrY eC++Nh a++Gg+avDGC+Efm++ geegt+ al+CaACgCHR+FH r Bradi3g37043.1.p 27 RGVRYGECRRNHVARTGGYAVDGCREFMAE-GEEGTSGALRCAACGCHRSFHHRVL 81 689************************8.999****************9976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD125774	2.0E-17	1	89	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51257	6	1	25	No hit	No description
Pfam	PF04770	2.0E-27	29	80	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	5.6E-21	30	79	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	24.079	31	80	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain

Sequence ? help Back to Top
Protein Sequence Length: 124 aa Download sequence Send to blast
MMKRFVILRR CHPPPPPATA FGGGCCRGVR YGECRRNHVA RTGGYAVDGC REFMAEGEEG 60 TSGALRCAAC GCHRSFHHRV LVPARCCCCI HADADAGAGA GASGLSWDVC STESTASSTA 120 ATS*

Functional Description ? help Back to Top
Source	Description
UniProt	Inhibits zinc finger homeodomain (ZHD) transcription factors, by interacting with them to prevent both their nuclear localization and their DNA-binding properties. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bradi3g37043.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010236710.1	1e-83	mini zinc finger protein 4
Swissprot	Q0J5F8	8e-36	MIF4_ORYSJ; Mini zinc finger protein 4
TrEMBL	A0A2K2D1P8	3e-82	A0A2K2D1P8_BRADI; Uncharacterized protein
STRING	OGLUM08G16680.1	3e-34	(Oryza glumipatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1431	34	120
Representative plant	OGRP91	16	237

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G28917.1	2e-24	mini zinc finger 2

Link Out ? help Back to Top
Phytozome	Bradi3g37043.1.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]