PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g37067.1.p
Common NameBRADI_3g37067, LOC100837405
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family NAC
Protein Properties Length: 382aa    MW: 43069.8 Da    PI: 7.4042
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g37067.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM168.91.7e-52161431128
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                       l pGfrFhPtdeelv++yLkkk+++k++++ e i+++diyk++PwdLpk ++++e+ewyf+++rd+ky+++ r+nr+t++g+Wkatg+d++++
  Bradi3g37067.1.p  16 LLPGFRFHPTDEELVSFYLKKKIQQKPISI-ELIRQLDIYKFDPWDLPKLASTGETEWYFYCPRDRKYRNSARPNRVTAAGFWKATGTDRPIY 107
                       579***************************.89***************88888999************************************* PP

               NAM  94 sk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                       s+ +++ +glkk+Lvfykgra +g ktdW+mhe+rl
  Bradi3g37067.1.p 108 SSeGTRCIGLKKSLVFYKGRAARGMKTDWMMHEFRL 143
                       *856667***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.44E-5713174IPR003441NAC domain
PROSITE profilePS5100556.99216174IPR003441NAC domain
PfamPF023659.5E-2618143IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MEGRNDISMD KSEEILLPGF RFHPTDEELV SFYLKKKIQQ KPISIELIRQ LDIYKFDPWD  60
LPKLASTGET EWYFYCPRDR KYRNSARPNR VTAAGFWKAT GTDRPIYSSE GTRCIGLKKS  120
LVFYKGRAAR GMKTDWMMHE FRLPSLADPS LPKRPIDKNI PLNDSWTICR IFKKTSSMAQ  180
RAMSHTWGPP LATEQHIFSA MQPVQASHFP LESSSCSLQV AAAPASQFTG KYDFQGQQQQ  240
FQKPNNAQDG SSCKVISFNC SPPLEAQKCP IILPFQAQPP QKPDDAAPPQ PFDIMEFGQP  300
EQVTGFVIDS SADVNAGMNT RNQDSSTRKP GNALNMNTEW EAPGKLNFPF DLGADSPDDW  360
KCNIPWESFL SPTVPAEMPH Y*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-521617717168NO APICAL MERISTEM PROTEIN
1ut4_B3e-521617717168NO APICAL MERISTEM PROTEIN
1ut7_A3e-521617717168NO APICAL MERISTEM PROTEIN
1ut7_B3e-521617717168NO APICAL MERISTEM PROTEIN
4dul_A3e-521617717168NAC domain-containing protein 19
4dul_B3e-521617717168NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPromotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269|PubMed:19081078}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g37067.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269|PubMed:19081078}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0730130.0AK073013.1 Oryza sativa Japonica Group cDNA clone:J033000B16, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003574551.10.0protein FEZ
SwissprotQ9ZVH05e-96FEZ_ARATH; Protein FEZ
TrEMBLI1I7G40.0I1I7G4_BRADI; Uncharacterized protein
STRINGBRADI3G37067.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP33663882
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26870.14e-98NAC family protein
Publications ? help Back to Top
  1. Bennett T,van den Toorn A,Willemsen V,Scheres B
    Precise control of plant stem cell activity through parallel regulatory inputs.
    Development, 2014. 141(21): p. 4055-64
    [PMID:25256342]