PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g37544.1.p
Common NameBRADI_3g37544, LOC104584226
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ERF
Protein Properties Length: 215aa    MW: 22744.3 Da    PI: 4.6596
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g37544.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.99.1e-171564255
               AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                      +ykGVr +k +grWv+eIr p++   r r++lg++ +ae+Aa a +aa+ +l+g
  Bradi3g37544.1.p 15 RYKGVRLRK-WGRWVSEIRMPNS---RERIWLGSYESAEKAALAFDAAAVCLRG 64
                      7******99.**********933...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541714.51E-181573IPR016177DNA-binding domain
CDDcd000183.44E-171574No hitNo description
Gene3DG3DSA:3.30.730.104.8E-271574IPR001471AP2/ERF domain
PROSITE profilePS5103221.3381573IPR001471AP2/ERF domain
PfamPF008474.3E-101564IPR001471AP2/ERF domain
SMARTSM003801.2E-301579IPR001471AP2/ERF domain
PRINTSPR003673.3E-81627IPR001471AP2/ERF domain
PRINTSPR003673.3E-83854IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MDAAGASRGE GSERRYKGVR LRKWGRWVSE IRMPNSRERI WLGSYESAEK AALAFDAAAV  60
CLRGSRAGSL NFPECPPDVQ YIPGSLPTPE RIQAVAARHA NSACPAPAAR VVAASSNAGA  120
ASQEAPATAR TSTSVDATGC DDMLDYWSFM DELPSSMPAS SSTSAANADI VIPAMDDFMY  180
GFSPPPRPAG EAAEDVIDDH GDDGHTFLSA LWKF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-131473463ATERF1
3gcc_A3e-131473463ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g37544.1.p
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703061e-75HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010236718.11e-155ethylene-responsive transcription factor ERF017
TrEMBLI1I7M01e-153I1I7M0_BRADI; Uncharacterized protein
STRINGBRADI3G37544.11e-154(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP86132144
Representative plantOGRP1454744
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74930.11e-24ERF family protein