PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bradi3g37700.1.p

Common Name

BRADI_3g37700

Organism

Brachypodium distachyon

Taxonomic ID

15368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

Nin-like

Protein Properties

Length: 154aa MW: 17485.9 Da PI: 6.232

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bradi3g37700.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	36.6	9.1e-12	59	102	7	50
RWP-RK 7 ledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkik 50 l+++ +y +lp+ +AAkeL++ + +LK R++GI+ WP +ik Bradi3g37700.1.p 59 LDEILRYLHLPMVEAAKELKMTPKALKHLSRRHGINPWPTQRIK 102 678999**********************************9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	11.354	40	124	IPR003035	RWP-RK domain
Pfam	PF02042	6.4E-11	59	102	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 154 aa Download sequence Send to blast
MDHFQVTILE SSLVDESNDG LVVVPMPVAP PATWNENPHA DMQHDKGTIV EQHERDDMLD 60 EILRYLHLPM VEAAKELKMT PKALKHLSRR HGINPWPTQR IKATNKNITK LLDAGTHGNN 120 KREASIQFKN MDLEKNKEEM HEKIATQSAE PEI*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bradi3g37700.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	I1I7N7	1e-109	I1I7N7_BRADI; Uncharacterized protein
STRING	BRADI3G37700.1	1e-110	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP50198	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24020.1	2e-09	NIN like protein 7

Link Out ? help Back to Top
Phytozome	Bradi3g37700.1.p