PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g38200.1.p
Common NameBRADI_3g38200, LOC100836269
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bZIP
Protein Properties Length: 354aa    MW: 37489.5 Da    PI: 6.821
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g38200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_146.11e-14275327557
                       CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
            bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkeva 57 
                       +r+rr++kNRe+A rsR+RK+a++ eLe +v++L+++N++L+k+ ee+ ++ +
  Bradi3g38200.1.p 275 RRQRRMIKNRESAARSRARKQAYTMELEAEVQKLKEQNEELQKKQEEMLEMQK 327
                       79***************************************999888777655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1702.7E-14270327No hitNo description
SMARTSM003385.4E-13271337IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.461273322IPR004827Basic-leucine zipper domain
PfamPF001701.8E-12275328IPR004827Basic-leucine zipper domain
SuperFamilySSF579595.88E-11275324No hitNo description
CDDcd147071.09E-27275329No hitNo description
PROSITE patternPS000360278293IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009738Biological Processabscisic acid-activated signaling pathway
GO:0010255Biological Processglucose mediated signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0000976Molecular Functiontranscription regulatory region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MDLGDGGESE RKGAAPPMPL ARQGSVYSLT FDEFQSTLGG ASGGGGLGKD FGSMNMDELL  60
RSIWTAEESQ AMASASAAPA GELQRQGSLT LPRTLSIKTV DEVWRDFVRD ASPGAAGGGE  120
PLPKRQPTLG EMTLEDFLVR AGVVRENPAA AAAVDAAVPP PLAARPIQVV NNGSMFFENF  180
GGANGASGAS AMGFAPVGIG DPSHPTMGNG MMPGVAGMGV GAVTVGPLDT SMGQLDSVGK  240
VNGELSSPVE PVPYPFEGVI RGRRSGGHVE KVVERRQRRM IKNRESAARS RARKQAYTME  300
LEAEVQKLKE QNEELQKKQE EMLEMQKNKA LEVINNPYGH KKRCLRRTLT GPW*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that mediates abscisic acid (ABA) signaling. Binds specifically to the ABA-responsive element (ABRE) of the EMP1 and RAB16A gene promoters. {ECO:0000269|PubMed:10611387}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00186DAPTransfer from AT1G45249Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g38200.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA). {ECO:0000269|PubMed:10611387}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ8503230.0KJ850323.1 Brachypodium distachyon ABF2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001304807.10.0bZIP transcription factor TRAB1
SwissprotQ6ZDF31e-150TRAB1_ORYSJ; bZIP transcription factor TRAB1
TrEMBLI1I7U30.0I1I7U3_BRADI; ABF2
STRINGBRADI3G38200.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP70638147
Representative plantOGRP5401580
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19290.12e-27ABRE binding factor 4
Publications ? help Back to Top
  1. Kagaya Y,Hobo T,Murata M,Ban A,Hattori T
    Abscisic acid-induced transcription is mediated by phosphorylation of an abscisic acid response element binding factor, TRAB1.
    Plant Cell, 2002. 14(12): p. 3177-89
    [PMID:12468735]
  2. Kobayashi Y, et al.
    Abscisic acid-activated SNRK2 protein kinases function in the gene-regulation pathway of ABA signal transduction by phosphorylating ABA response element-binding factors.
    Plant J., 2005. 44(6): p. 939-49
    [PMID:16359387]
  3. Kobayashi F,Maeta E,Terashima A,Takumi S
    Positive role of a wheat HvABI5 ortholog in abiotic stress response of seedlings.
    Physiol Plant, 2008. 134(1): p. 74-86
    [PMID:18433415]
  4. Wang L, et al.
    Genome-wide analysis of SnRK gene family in Brachypodium distachyon and functional characterization of BdSnRK2.9.
    Plant Sci., 2015. 237: p. 33-45
    [PMID:26089150]