PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g38360.1.p
Common NameBRADI_3g38360, LOC100836972
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bHLH
Protein Properties Length: 239aa    MW: 25642.6 Da    PI: 9.0773
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g38360.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.16.4e-132470354
                      HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
               HLH  3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                      r+h+e+Er+RR+riN  +++Lr+ +P+a      +++Ka+ L ++v+++++L
  Bradi3g38360.1.p 24 RSHSEAERKRRQRINGHLATLRTFVPSA-----SRMDKAALLGEVVRHVREL 70
                      58*************************9.....7***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.2622170IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-102470IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.80E-112471No hitNo description
Gene3DG3DSA:4.10.280.101.7E-132473IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.41E-132477IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.6E-112776IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MATDGECSAR RPASSSRKAG PAVRSHSEAE RKRRQRINGH LATLRTFVPS ASRMDKAALL  60
GEVVRHVREL RGKASDATAG ADVVFPGEAD EVGVEEEEEE DDHGQHHQQR RRRGGRVVRA  120
WVCCADRPGL MSDLGRAVRS ASASARPVRA EIATVGGRTR GVLELDCDAD GIGNASDRAV  180
ALSALRAALR TVLLNRDELL LAAAAAREDE GHKRPRRLSP PQTPPSWSSA DLQSSDLL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12934ERKRRQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g38360.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7279682e-55KJ727968.1 Zea mays clone pUT6081 bHLH transcription factor (bHLH169) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003572297.11e-166transcription factor AIG1
TrEMBLI1I7W81e-165I1I7W8_BRADI; Uncharacterized protein
STRINGBRADI3G38360.11e-166(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP41143569
Representative plantOGRP37715106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56770.13e-16bHLH family protein