PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bradi3g38510.1.p

Common Name

BRADI_3g38510, LOC100839107

Organism

Brachypodium distachyon

Taxonomic ID

15368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

bHLH

Protein Properties

Length: 322aa MW: 34208.3 Da PI: 5.9234

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bradi3g38510.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	46.7	5.8e-15	92	143	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+++N+ ++ Lr+l+P++ + ++ + a+i A++Y+k+L+ Bradi3g38510.1.p 92 QRMTHIAVERNRRRQMNDYLAALRSLMPPS---YVQRGDQASIIGGAINYVKELE 143 79**************************...9****************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	9.63E-16	90	147	No hit	No description
Gene3D	G3DSA:4.10.280.10	2.0E-14	90	147	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.2E-17	91	155	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	16.329	91	142	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.1E-12	92	143	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	6.3E-12	97	148	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 322 aa Download sequence Send to blast
MALEAVVFSE GFFGCPAMPA SEGPWGGTAA SSSNAYGAIE GVLELDYGGN ACSWSAAAPA 60 PEELAEPAAS GAGRRKRRRV RSVKNVEEVE SQRMTHIAVE RNRRRQMNDY LAALRSLMPP 120 SYVQRGDQAS IIGGAINYVK ELEQLLQSLQ ARRHARRPIG TDDNTSAAAV APFADFFTFP 180 QYTMRAPDAA ASASANDAEA VAAGNADADT TDIADAMVAS SGSKQSSVAE IEVTIVESHA 240 SLKALTRRRP RQLLRLVAGL QGHRLAVLHL NATGAGHMAL YSLSLKVEDD CRLSSVDDIA 300 AAVHRIIETI AQEEQQQLSC S*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	74	78	RKRRR
2	75	79	KRRRV
3	92	103	RMTHIAVERNRR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bradi3g38510.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010235229.1	0.0	transcription factor bHLH96
TrEMBL	A0A0Q3QAH7	0.0	A0A0Q3QAH7_BRADI; Uncharacterized protein
STRING	BRADI3G38510.1	0.0	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP741	38	156
Representative plant	OGRP253	15	131

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G22490.1	3e-59	bHLH family protein

Link Out ? help Back to Top
Phytozome	Bradi3g38510.1.p
Entrez Gene	100839107