PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g38682.2.p
Common NameBRADI_3g38682
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family Trihelix
Protein Properties Length: 365aa    MW: 40602 Da    PI: 6.6486
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g38682.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix61.32.3e-1937123286
          trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkm........rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                       W++ e+++L++++++++++lrrg+lk+++We+v++          +  g +++ +qC++k+e+l+kry++++++         s +p+f++++
  Bradi3g38682.2.p  37 WSHAETMHLLDVYEDRWNKLRRGQLKAQQWEDVAAETtarcvasgAGAGQRKTGTQCRHKLEKLRKRYRAEAARPVA------SLWPFFRRMD 123
                       ************************************99*****998999999*******************999886......58******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.1E-1835125No hitNo description
SMARTSM005952.9E-644130IPR006578MADF domain
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MDSDDPRHDL RGRAPAPALP GASGGATTKK SGPGQPWSHA ETMHLLDVYE DRWNKLRRGQ  60
LKAQQWEDVA AETTARCVAS GAGAGQRKTG TQCRHKLEKL RKRYRAEAAR PVASLWPFFR  120
RMDQLERGPR AALSPPAAAS DDEGEEEEEE EEEGEEDDED EEGQRQVEEP ELVPRNSKSI  180
NGILRDGGGG FRGFTSRPPQ PQQPPPPSPC LTLSNAPPRK RVAYEAFQAQ AAADRVKAEE  240
AQADRSGAVA HGPFSDVLRD FGEGLMRLER RRMDVQWEIE RGWKEVEARH SRMLQDAQRR  300
IQDTIAAVAA SASGKKARRD HGSSGDDDFA SQMKIRQRLV AKFFQTAWTS GKIGRSTKAE  360
EYVDL
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g38682.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003574665.10.0trihelix transcription factor ASIL1
TrEMBLA0A2K2D2150.0A0A2K2D215_BRADI; Uncharacterized protein (Fragment)
STRINGBRADI3G38680.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP100782933
Representative plantOGRP1302445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44730.15e-21Trihelix family protein