PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g38840.1.p
Common NameBRADI_3g38840, LOC100843982
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bZIP
Protein Properties Length: 221aa    MW: 23933.5 Da    PI: 8.2429
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g38840.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_138.23.2e-12104157356
                       XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
            bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkev 56 
                       e +r rr+ +NRe+ArrsR RK+ ++ eL  +v+ L + N++L +el++    +
  Bradi3g38840.1.p 104 EERRRRRMVSNRESARRSRMRKQRQLSELWARVAHLRSANRRLLDELNRALRAC 157
                       66899******************************************9866555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003382.4E-10102166IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.542104152IPR004827Basic-leucine zipper domain
PfamPF001702.2E-9104152IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1705.8E-9106153No hitNo description
SuperFamilySSF579597.22E-10106154No hitNo description
PROSITE patternPS000360109124IPR004827Basic-leucine zipper domain
CDDcd147022.15E-15111158No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MYHHNHGEVA SLHFLLPPNP SSSFTTHHHM NMALPPQAYF PPSFEPPALL TGDDTAAAFE  60
FETILEEAAH LVSGNGSPSS GSDGGGGNCY YQEGSAGAGA AAAEERRRRR MVSNRESARR  120
SRMRKQRQLS ELWARVAHLR SANRRLLDEL NRALRACADA CRESARLRDE KTKLTEKLEQ  180
LLKQPAPEKT ASSSAASSNR SSCSSEPCKN SATAADGVTE *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1118125RRSRMRKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g38840.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003572318.11e-161bZIP transcription factor 11
TrEMBLI1I8321e-159I1I832_BRADI; Uncharacterized protein
STRINGBRADI3G38840.11e-160(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118635126
Representative plantOGRP1302545
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13600.11e-08basic leucine-zipper 58